Factsheet for PGSC0003DMT400036646

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92538	Sorghum	cytosol	77.45	21.07
Zm00001d047897_P013	Maize	cytosol	76.8	20.78
Os03t0254700-01	Rice	cytosol	76.8	20.74
TraesCS4D01G221200.1	Wheat	cytosol	76.8	20.72
TraesCS4A01G083300.2	Wheat	cytosol	76.8	20.7
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	76.8	20.69
TraesCS4B01G220900.3	Wheat	cytosol	76.8	20.69
Zm00001d028481_P017	Maize	cytosol	75.16	20.34
GSMUA_Achr4P09920_001	Banana	cytosol	75.49	20.09
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.84	19.84
GSMUA_Achr6P22950_001	Banana	plasma membrane	79.08	19.55
PGSC0003DMT400079377	Potato	cytosol	68.63	18.52
PGSC0003DMT400063603	Potato	cytosol	66.01	17.84
PGSC0003DMT400028457	Potato	cytosol	43.79	11.36
Solyc05g016070.1.1	Tomato	cytosol	2.29	5.34
PGSC0003DMT400077797	Potato	cytosol	1.63	5.15
PGSC0003DMT400036648	Potato	plastid	2.29	0.8
PGSC0003DMT400036656	Potato	cytosol	0.0	0.0
PGSC0003DMT400036657	Potato	cytosol, mitochondrion	0.0	0.0
PGSC0003DMT400036649	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006594
InterPro:IPR006595	InterPro:LisH	UniProt:M1B3Z5	EnsemblPlantsGene:PGSC0003DMG400014137	PGSC:PGSC0003DMG400014137	EnsemblPlants:PGSC0003DMT400036646
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF4	SMART:SM00667	SMART:SM00668
InterPro:Topless_fam	UniParc:UPI0002966EDD	:	:	:	:

Description

Protein TOPLESS [Source:PGSC_GENE;Acc:PGSC0003DMG400014137]

Coordinates

chr3:+:57109218..57111637

Molecular Weight (calculated)

35112.3 Da

IEP (calculated)

9.079

GRAVY (calculated)

-0.473

Length

306 amino acids

Sequence
(BLAST)

001: MKLSLSEHHG DKSVSKPKSR QLSAVDSKLS KKMKLSAQTL FLHTSSGLED EVVAMSSLSR ELVFLILQFL DEEKFKETVH KLEQESGFFF NMKYFEDEVH
101: NGNWDEVEKY LSGFTKVDDN RYSMKIFFEI RKQKYLEALD KRDRSKGVEI LVKDLKVFAS FNEELFKEIT QLLTLENFRE NEQLSKYGDT KSARAIMLVE
201: LKKLIEANPL FRDKLQFPNL KNSRLRTLIN QSLNWQHQLC KNPRPNPDIK TLFVDHSCGQ PNGARAPSPA NNPLLGSVPK PGSFPPLGAH GVGFFVQLTC
301: YLCLTT

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.