Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 6
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036657 | Potato | cytosol, mitochondrion | 6.04 | 77.94 |
| PGSC0003DMT400036649 | Potato | cytosol | 41.62 | 74.95 |
| PGSC0003DMT400036656 | Potato | cytosol | 15.17 | 68.56 |
| PGSC0003DMT400077797 | Potato | cytosol | 6.84 | 61.86 |
| Os03t0254700-01 | Rice | cytosol | 76.62 | 59.31 |
| GSMUA_Achr4P09920_001 | Banana | cytosol | 77.19 | 58.87 |
| EER92538 | Sorghum | cytosol | 75.37 | 58.76 |
| GSMUA_Achr6P36440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 77.31 | 58.75 |
| HORVU0Hr1G008690.1 | Barley | cytosol, endoplasmic reticulum | 75.83 | 58.54 |
| Zm00001d028481_P017 | Maize | cytosol | 75.48 | 58.53 |
| TraesCS4D01G221200.1 | Wheat | cytosol | 75.6 | 58.47 |
| TraesCS4A01G083300.2 | Wheat | cytosol | 75.6 | 58.41 |
| TraesCS4B01G220900.3 | Wheat | cytosol | 75.37 | 58.19 |
| Zm00001d047897_P013 | Maize | cytosol | 75.03 | 58.18 |
| GSMUA_Achr6P22950_001 | Banana | plasma membrane | 77.77 | 55.09 |
| Solyc05g016070.1.1 | Tomato | cytosol | 7.98 | 53.44 |
| PGSC0003DMT400079377 | Potato | cytosol | 66.82 | 51.68 |
| PGSC0003DMT400063603 | Potato | cytosol | 57.47 | 44.52 |
| PGSC0003DMT400028457 | Potato | cytosol | 45.72 | 33.98 |
| PGSC0003DMT400036646 | Potato | cytosol, plastid | 0.8 | 2.29 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1B3Z6 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG401014138 |
| PGSC:PGSC0003DMG401014138 | EnsemblPlants:PGSC0003DMT400036648 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 |
| PANTHER:PTHR44083:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Topless_fam | UniParc:UPI000294D03F | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG401014138]
Coordinates
chr3:+:57112055..57121082
Molecular Weight (calculated)
95545.7 Da
IEP (calculated)
6.991
GRAVY (calculated)
-0.297
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSPTVAHP AVSGGPMGLG PSSIPASLKH PRTPPTNPSI DYPSGESDHA AKRTRSLGIS DEVNLPVNVL PISFPGQGHN QSLTVPDDLP KTVARTLNQG
101: SSPMSMDFHP SQQTLLLVGT NVGDIALWEV GSRERLVLRN FKVWDLSACS MPLQTALVKD PGVSVNRVIW SPDGSLFGVA YSRHIVQIYS YHGNDDIRQH
201: VEIDAHVGGV NDLAFSHPNK QLSVITCGDD KTIKVWDATS GARQYTFEGH EAPVYSVCPH HKETIQFIFS TALDGKIKAW LYDNLGSRVD YEAPGRWCTT
301: MAYSADGTRL FSCGTSKDGE SHIVEWNESE GAVKRTYQGF RKRSLGVVQF DTTKNRFLAA GDDFSIKFWD MDHVPLLTSI DADGGLPASP RIRFNKDGSL
401: LAVSANENGI KILANNDGIR LVRTFENLAY DASRASETTK PTVNPISIAS ANNSGFADRV ASVVGISGMN GDARNPVDVK PRINEEPNDK SKIWKLTEIS
501: ESSQCRSLKL PENLRVTKIS RLIYTNSGNA VLALASNAIH LLWKWQRNDR NTSGKATASV SPQLWQPSSG ILMTNDVHEP NHEEAVSCFA LSKNDSYVMS
601: ASGGKISLFN MMTFKTMTTF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK SKLKGHSKRI TGLAFSHVLN VLVSSGADSQ LCVWSTDGWE
701: KQRARTLQLP GRSTSQSDTR VQFHQDQTHF LAVHEAQIAI FETTKLECLK QWVPRESAAP ISHATFSCDS QLIYASFLDA TVCVFTAGHL HMRCRIIPSA
801: YLSPSISNSN IHPVVVAAHP QDPNQFALGL SDGSVHVFEP LESEGKWGVP PPLENGSANG MPTAPSIGAS GSDQAPR
101: SSPMSMDFHP SQQTLLLVGT NVGDIALWEV GSRERLVLRN FKVWDLSACS MPLQTALVKD PGVSVNRVIW SPDGSLFGVA YSRHIVQIYS YHGNDDIRQH
201: VEIDAHVGGV NDLAFSHPNK QLSVITCGDD KTIKVWDATS GARQYTFEGH EAPVYSVCPH HKETIQFIFS TALDGKIKAW LYDNLGSRVD YEAPGRWCTT
301: MAYSADGTRL FSCGTSKDGE SHIVEWNESE GAVKRTYQGF RKRSLGVVQF DTTKNRFLAA GDDFSIKFWD MDHVPLLTSI DADGGLPASP RIRFNKDGSL
401: LAVSANENGI KILANNDGIR LVRTFENLAY DASRASETTK PTVNPISIAS ANNSGFADRV ASVVGISGMN GDARNPVDVK PRINEEPNDK SKIWKLTEIS
501: ESSQCRSLKL PENLRVTKIS RLIYTNSGNA VLALASNAIH LLWKWQRNDR NTSGKATASV SPQLWQPSSG ILMTNDVHEP NHEEAVSCFA LSKNDSYVMS
601: ASGGKISLFN MMTFKTMTTF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK SKLKGHSKRI TGLAFSHVLN VLVSSGADSQ LCVWSTDGWE
701: KQRARTLQLP GRSTSQSDTR VQFHQDQTHF LAVHEAQIAI FETTKLECLK QWVPRESAAP ISHATFSCDS QLIYASFLDA TVCVFTAGHL HMRCRIIPSA
801: YLSPSISNSN IHPVVVAAHP QDPNQFALGL SDGSVHVFEP LESEGKWGVP PPLENGSANG MPTAPSIGAS GSDQAPR
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
Arabidopsis Description
TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.