CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20137	Soybean	endoplasmic reticulum	98.85	98.94
VIT_11s0016g05620.t01	Wine grape	cytosol	87.04	87.19
PGSC0003DMT400079377	Potato	cytosol	79.63	79.63
Solyc07g008040.2.1	Tomato	nucleus	76.54	79.12
KRH33863	Soybean	cytosol	18.52	76.36
KRH23604	Soybean	endoplasmic reticulum	76.01	76.15
KRH44501	Soybean	cytosol	75.57	75.64
KRH47407	Soybean	cytosol	75.13	75.4
KRH09700	Soybean	cytosol	73.81	74.07
Bra028653.1-P	Field mustard	mitochondrion	72.4	67.13
KRH68470	Soybean	nucleus	63.23	63.45
KRG92932	Soybean	nucleus	63.05	63.27
KRG96753	Soybean	endoplasmic reticulum	62.79	63.01
Bra006005.1-P	Field mustard	cytosol	59.08	62.38
KRH33861	Soybean	cytosol	44.0	59.26
Bra006006.1-P	Field mustard	cytosol	48.5	56.18
KRH30800	Soybean	mitochondrion	15.08	52.45
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.94	49.15
KRH52398	Soybean	cytosol	45.24	48.67
KRH05196	Soybean	cytosol	22.22	46.41
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.75	34.54
CDX83225	Canola	cytosol	22.4	33.96
CDY38509	Canola	cytosol	22.84	33.81

Protein Annotations

EntrezGene:100805156	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:ACUP02010356	InterPro:CTLH_C
EnsemblPlantsGene:GLYMA_17G112500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1MU67	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH03669	ProteinID:KRH03669
ProteinID:KRH03669.1	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF4	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI000233E0B6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:8878996..8887404

Molecular Weight (calculated)

124884.0 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.289

Length

1134 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMRY FEDMVTNGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKQDR AKAVDILVKD
0101: LKVFAAFNEE LFKEITQLLT LDNFRHNEQL SKYGDTKSAR GIMLAELKKL IEANPLFRDK LQFPTLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQVQPN GARAPSPVTN PLMGAVPKAG GFPPLGAHGP FQPTPAALPT SLAGWMANPS PVPHPSASAG PIGLAAANNA AILKRPRTPP SNNPAMDYQT
0301: ADSDHVLKRT RPFGLSDEVS NLPVNLLPVA YSGQSHGQSS YSSDDLPKTV VMTLNQGSIV KSMDFHPLQQ ILLLVGTNMG DVMVWDIGSR ERIAQRNFKV
0401: WELGACSVAL QASLSNDYSA SINRVVWSPD GTLCSVAYSK HIVHIYSYHG GDDLRNHLEI EAHAGSVNDL AFSYPNKQLC VVTCGEDRVI KVWDAVTGAK
0501: QYTFEGHEAP VYSVCPHHKE SIQFIFSTAT DGKIKAWLYD NMGSRVDYDA PGHSSTTMAY SADGTRLFSC GTNKEGESFL VEWNESEGAV KRTYHGLGKR
0601: SVGVVQFDTT KNRFLAAGDE FTIKFWDMDN TNMLTSVEAE GGLLASPCIR FNKDGILLAV STNDNGVKIL ANAEGIRLLR TVENRTFDAS RVASAAVVKA
0701: PTIGAFPSTN VTVGTSLADR APPVAAMVGI NNDTRNLADV KPRIVDESVE KSRIWKLTEI NEPSQCRSLK LPDSLSSMRV SRLIYTNQGV AILALAANAV
0801: HKLWKWQRNE RNTTGKATAS IQPQLWQPSS GILMTNDISD TNPEDAVSCF ALSKNDSYVM SASGGKISLF NMMTFKTMTT FMPPPPAATF LAFHPQDNNI
0901: IAIGMEDSSI QIYNVRVDEV KTKLKGHQKR ITGLAFSHVL NVLVSSGADS QLCVWSTDGW EKQASKFLQM PSGRPPAPLA DTRVQFHLDQ THLLAVHETQ
1001: IALYEAPKLE CIKQFSPREA NPITHATYSC DSQSIYVSFE DGSIGILTVP ALRLRCRINQ SAYLHPNPSL RVHPLVIAAH PSEPNQFALG LTDGGVHVLE
1101: PLEAEGKWGT PPPNENGAGP STASGAAVSE QPQR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.