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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX70287
CDX73212
CDX77061
CDX80214
CDX80590
CDX81933
CDX82696
CDX85931
CDX87650
CDX92100
CDX92405
CDX92406
CDX95900
CDY03358
CDY04475
CDY09103
CDY10359
CDY13521
CDY16595
CDY21661
CDY28102
CDY29763
CDY31584
CDY35867
CDY39073
CDY48192
CDY48711
CDY50502
CDY50960
CDY56413
CDY59516
CDY62055
CDY67912
CDY70287

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14620.1 CDY28102 AT1G49590.1 23524848
AT5G14620.1 CDY50960 AT1G49590.1 23524848
AT5G14620.1 CDX68112 AT1G75950.1 24855943
AT5G14620.1 CDX73212 AT1G75950.1 24855943
AT5G14620.1 CDX80590 AT1G75950.1 24855943
AT5G14620.1 CDX85931 AT1G75950.1 24855943
AT5G14620.1 CDX87650 AT1G75950.1 24855943
AT5G14620.1 CDY13521 AT1G75950.1 24855943
AT5G14620.1 CDY39073 AT1G75950.1 24855943
AT5G14620.1 CDX81933 AT2G19520.1 24855943
AT5G14620.1 CDX82696 AT2G19520.1 24855943
AT5G14620.1 CDY03358 AT2G19520.1 24855943
AT5G14620.1 CDY21661 AT2G19520.1 24855943
AT5G14620.1 CDY29763 AT2G19520.1 24855943
AT5G14620.1 CDY35867 AT2G19520.1 24855943
AT5G14620.1 CDY48711 AT2G19520.1 24855943
AT5G14620.1 CDY70287 AT2G19520.1 24855943
AT5G14620.1 CDX77061 AT2G27040.1 24855943
AT5G14620.1 CDY04475 AT2G27040.1 24855943
AT5G14620.1 CDY48192 AT2G27040.1 24855943
AT5G14620.1 CDY56413 AT2G27040.1 24855943
AT5G14620.1 CDY62055 AT2G27040.1 24855943
AT5G14620.1 CDX92100 AT3G16830.1 24855943
AT5G14620.1 CDX95900 AT3G16830.1 24855943
AT5G14620.1 CDY50502 AT3G16830.1 24855943
AT5G14620.1 CDY67912 AT3G16830.1 24855943
AT5G14620.1 CDX80214 AT3G45980.1 24855943
AT5G14620.1 CDY31584 AT3G45980.1 24855943
AT5G14620.1 CDX70287 AT5G03740.1 24855943
AT5G14620.1 CDY10359 AT5G03740.1 24855943
AT5G14620.1 CDX92405 AT5G21150.1 24855943
AT5G14620.1 CDX92406 AT5G21150.1 24855943
AT5G14620.1 CDY09103 AT5G21150.1 24855943
AT5G14620.1 CDY16595 AT5G21150.1 24855943
AT5G14620.1 CDY59516 AT5G21150.1 24855943
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85590 Canola cytosol 83.24 82.8
CDX69571 Canola nucleus 70.63 70.5
Bra023479.1-P Field mustard cytosol 42.16 70.27
HORVU4Hr1G017920.1 Barley cytosol 9.91 67.9
CDY09872 Canola nucleus 67.93 67.81
Os11t0109200-00 Rice plastid 19.1 63.47
CDX85589 Canola nucleus 49.73 62.02
TraesCS6A01G124200.1 Wheat peroxisome 23.24 60.28
TraesCSU01G224900.1 Wheat peroxisome 37.3 55.2
AT5G14620.1 Thale cress nucleus 60.9 53.99
CDY40934 Canola nucleus 41.26 52.89
Zm00001d044187_P001 Maize cytosol 22.88 51.84
HORVU3Hr1G098990.3 Barley cytosol, nucleus 41.44 50.55
TraesCS3D01G454900.1 Wheat peroxisome 40.9 50.33
TraesCS3A01G461200.1 Wheat cytosol, nucleus, peroxisome 42.16 47.95
CDY40933 Canola cytosol 54.41 47.48
KRH69576 Soybean nucleus 44.68 46.18
HORVU6Hr1G081790.1 Barley nucleus 43.24 44.44
HORVU3Hr1G098970.1 Barley nucleus 40.36 44.18
TraesCS3A01G461300.1 Wheat cytosol, nucleus, peroxisome 42.34 44.09
Os03t0110800-01 Rice nucleus 46.31 43.05
EER95283 Sorghum nucleus 44.32 42.71
GSMUA_Achr11P... Banana nucleus 34.77 41.87
TraesCS6A01G338800.1 Wheat nucleus 45.41 41.65
TraesCS4A01G267400.1 Wheat nucleus 32.07 41.59
OQU93413 Sorghum nucleus 45.41 41.52
TraesCS4B01G012300.2 Wheat cytosol 23.78 41.51
TraesCS6D01G319500.2 Wheat nucleus 45.05 41.32
Zm00001d048516_P001 Maize nucleus 44.86 41.29
HORVU0Hr1G018360.1 Barley cytosol, peroxisome 32.25 41.24
TraesCS5A01G241800.1 Wheat nucleus 45.77 41.1
GSMUA_Achr8P33680_001 Banana cytosol 37.48 40.86
TraesCS5D01G248300.1 Wheat nucleus 45.41 40.78
TraesCSU01G140500.1 Wheat nucleus 43.78 40.43
EES00541 Sorghum nucleus 43.96 40.13
TraesCSU01G124200.1 Wheat nucleus 43.24 39.8
TraesCS5A01G553300.3 Wheat nucleus 43.24 39.34
TraesCS4D01G046800.1 Wheat nucleus 42.34 39.1
GSMUA_Achr3P23940_001 Banana nucleus 42.34 39.1
TraesCSU01G140600.1 Wheat nucleus 43.6 39.03
HORVU4Hr1G089730.3 Barley nucleus 24.32 37.82
TraesCS3A01G461500.1 Wheat nucleus 43.24 37.38
OQU87185 Sorghum cytosol 15.86 37.29
TraesCS6A01G163300.1 Wheat cytosol, nucleus, peroxisome 38.02 36.51
TraesCS6D01G147500.2 Wheat cytosol, nucleus, peroxisome 37.84 36.08
Os12t0108900-00 Rice cytosol, nucleus 22.7 35.39
Zm00001d027329_P002 Maize nucleus 45.05 35.36
HORVU6Hr1G032260.8 Barley nucleus, peroxisome 35.5 33.45
CDX95928 Canola golgi 56.22 33.19
TraesCS3A01G067600.1 Wheat nucleus 42.34 30.96
HORVU7Hr1G000490.1 Barley cytosol 1.62 28.12
TraesCS6D01G114500.1 Wheat mitochondrion 23.96 27.88
CDX82030 Canola endoplasmic reticulum 23.24 22.95
CDY13817 Canola plastid 22.34 22.71
CDX95858 Canola cytosol 28.11 22.07
CDX92125 Canola plasma membrane, vacuole 28.29 17.76
Protein Annotations
KEGG:00270+2.1.1.37Gene3D:1.10.8.10MapMan:12.5.1.11Gene3D:2.20.70.90Gene3D:3.40.50.150GO:A0A078DP55
InterPro:C5_MeTfraseEnsemblPlants:CDX91035ProteinID:CDX91035ProteinID:CDX91035.1GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006259GO:GO:0006306GO:GO:0008150
GO:GO:0008152GO:GO:0008168GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00151801001InterPro:IPR001525
InterPro:IPR015940InterPro:IPR030380PFAM:PF00145PFAM:PF09288PFscan:PS50030PFscan:PS51680
PANTHER:PTHR23068PANTHER:PTHR23068:SF3MetaCyc:PWY-7511InterPro:SAM-dependent_MTasesInterPro:SAM_MeTfrase_DRMSUPFAM:SSF46934
SUPFAM:SSF53335InterPro:UBAInterPro:UBA-like_sfInterPro:UBA_C_funUniPathway:UPA00143UniParc:UPI0004EE51AA
Description
BnaC02g05620D
Coordinates
chrLK031865:+:456543..459194
Molecular Weight (calculated)
62390.9 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.375
Length
555 amino acids
Sequence
(BLAST)
001: MFATLVDMGF SDDMIARAIQ ENGPNAETSA IIDTISKYSM NCEPSSSKSK TIDHFLAMGF DEEKIIKAIH KLGEENMEEI ANALLSSEAD TSPMMKEEDN
101: MDWSDSDDEM KYSDLLSSDD EKDQDSLYSC NPLSSLVKMG FSELEASLAI ERCGDSVSIA DLADFICAAH IAREFDEFHI DPEEQKDIKK RRKEPRPSAN
201: NQPLHLPNPM IGFGVPNEAV FITHRSLPAL ARAPPYFYYE NVACAPTGVW ETISSHLYDV LPDFVDSKFI CAAARKRGYV HNLPISNRYQ IQPAPKLTIQ
301: EALSHTRKWW PAWDTRTKLN CILTVHASAQ TTKRIRLELE AHTGEPSEAT KRYVIEQCRR WNLVWVGKNK VAPLDADEIE SLLGFPKYHT RGGGISNTDR
401: LKSLGNSFQV DTVAYHLSVL KPLFPDGISV LSLFTGIGGG EVALHHLKIP MKTVVSVEIS EGNRNILRDF WDQTNQRGEF IEFEDVQDLT RDKIVELMKR
501: FGGFDLVIGG SPCNNLAGGN RVSRSGLEGE QSSLFFEFCR ILEVVRETTM EMRRS
Best Arabidopsis Sequence Match ( AT5G14620.1 )
(BLAST)
001: MVIWNNDDDD FLEIDNFQSS PRSSPIHAMQ CRVENLAGVA VTTSSLSSPT ETTDLVQMGF SDEVFATLFD MGFPVEMISR AIKETGPNVE TSVIIDTISK
101: YSSDCEAGSS KSKAIDHFLA MGFDEEKVVK AIQEHGEDNM EAIANALLSC PEAKKLPAAV EEEDGIDWSS SDDDTNYTDM LNSDDEKDPN SNENGSKIRS
201: LVKMGFSELE ASLAVERCGE NVDIAELTDF LCAAQMAREF SEFYTEHEEQ KPRHNIKKRR FESKGEPRSS VDDEPIRLPN PMIGFGVPNE PGLITHRSLP
301: ELARGPPFFY YENVALTPKG VWETISRHLF EIPPEFVDSK YFCVAARKRG YIHNLPINNR FQIQPPPKYT IHDAFPLSKR WWPEWDKRTK LNCILTCTGS
401: AQLTNRIRVA LEPYNEEPEP PKHVQRYVID QCKKWNLVWV GKNKAAPLEP DEMESILGFP KNHTRGGGMS RTERFKSLGN SFQVDTVAYH LSVLKPIFPH
501: GINVLSLFTG IGGGEVALHR LQIKMKLVVS VEISKVNRNI LKDFWEQTNQ TGELIEFSDI QHLTNDTIEG LMEKYGGFDL VIGGSPCNNL AGGNRVSRVG
601: LEGDQSSLFF EYCRILEVVR ARMRGS
Arabidopsis Description
DRM2DNA (cytosine-5)-methyltransferase DRM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M548]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.