Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | CDY07630 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDY60335 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDX70245 | AT5G04290.1 | 19410546 |
| AT2G27040.1 | CDY41384 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04475 | Canola | nucleus | 98.81 | 98.81 |
| CDY48192 | Canola | nucleus | 95.67 | 95.77 |
| CDX77061 | Canola | nucleus | 95.23 | 95.34 |
| AT2G27040.1 | Thale cress | nucleus | 88.41 | 88.31 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 72.91 | 73.71 |
| Solyc01g008960.2.1 | Tomato | nucleus | 72.37 | 73.49 |
| PGSC0003DMT400058471 | Potato | nucleus | 72.37 | 73.49 |
| KRH14678 | Soybean | nucleus | 71.94 | 73.29 |
| KRH73469 | Soybean | nucleus | 71.72 | 73.07 |
| PGSC0003DMT400069459 | Potato | nucleus | 72.26 | 73.06 |
| Solyc06g073540.2.1 | Tomato | nucleus | 72.16 | 72.95 |
| CDY72062 | Canola | plastid | 22.75 | 70.71 |
| KRG89867 | Soybean | nucleus | 70.96 | 69.17 |
| CDY09103 | Canola | nucleus | 67.39 | 68.65 |
| Solyc06g073530.1.1 | Tomato | nucleus | 66.09 | 67.48 |
| Zm00001d040429_P012 | Maize | nucleus | 65.66 | 67.26 |
| Zm00001d008249_P012 | Maize | nucleus | 65.33 | 67.0 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 66.41 | 66.99 |
| Os04t0151800-02 | Rice | nucleus | 66.09 | 66.96 |
| Os01t0275600-01 | Rice | nucleus | 65.55 | 66.92 |
| OQU86696 | Sorghum | nucleus | 65.11 | 66.78 |
| TraesCS3A01G188400.1 | Wheat | nucleus | 64.57 | 65.07 |
| HORVU3Hr1G038830.1 | Barley | nucleus | 64.79 | 64.86 |
| CDX92405 | Canola | nucleus | 64.14 | 64.7 |
| EES18816 | Sorghum | nucleus | 63.49 | 64.47 |
| CDX92417 | Canola | nucleus | 44.75 | 64.13 |
| CDX92406 | Canola | nucleus | 62.41 | 63.72 |
| TraesCS7D01G458800.1 | Wheat | nucleus | 32.07 | 63.52 |
| TraesCS1D01G453600.1 | Wheat | nucleus | 63.38 | 63.45 |
| CDY59516 | Canola | nucleus | 62.19 | 63.36 |
| Zm00001d039214_P025 | Maize | nucleus | 63.38 | 63.31 |
| TraesCS1A01G445500.1 | Wheat | golgi, unclear | 63.27 | 63.14 |
| TraesCS1B01G480100.1 | Wheat | nucleus | 63.38 | 63.11 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 64.46 | 63.03 |
| CDY16587 | Canola | nucleus | 60.02 | 62.81 |
| TraesCS7A01G533100.1 | Wheat | cytosol | 60.02 | 61.49 |
| TraesCS7D01G520400.1 | Wheat | nucleus | 60.24 | 61.17 |
| CDY68123 | Canola | cytosol, endoplasmic reticulum, nucleus | 15.49 | 60.59 |
| TraesCS7B01G450300.1 | Wheat | nucleus | 59.59 | 59.85 |
| TraesCS3D01G191600.5 | Wheat | nucleus | 64.46 | 59.38 |
| CDY62055 | Canola | nucleus | 36.73 | 58.85 |
| CDY16595 | Canola | nucleus | 57.53 | 57.72 |
| TraesCS7B01G450200.2 | Wheat | nucleus | 57.64 | 57.45 |
| TraesCS7A01G521000.1 | Wheat | nucleus | 48.97 | 55.73 |
| TraesCS7B01G437900.1 | Wheat | cytosol | 48.32 | 55.27 |
| CDX84712 | Canola | nucleus | 51.9 | 55.25 |
| CDX79495 | Canola | nucleus | 51.35 | 54.67 |
| TraesCS7B01G437700.1 | Wheat | nucleus | 51.46 | 54.04 |
| EES00570 | Sorghum | nucleus | 52.33 | 53.79 |
| Os01t0275200-00 | Rice | golgi, peroxisome, plastid | 26.87 | 53.1 |
| TraesCS7B01G373400.1 | Wheat | nucleus | 43.23 | 50.76 |
| TraesCS7D01G458900.1 | Wheat | mitochondrion | 9.21 | 46.7 |
| HORVU7Hr1G107770.1 | Barley | nucleus | 29.14 | 44.98 |
| CDY04517 | Canola | plastid | 33.91 | 32.71 |
| CDX71410 | Canola | nucleus | 33.59 | 32.56 |
| CDX94724 | Canola | plastid | 34.13 | 32.11 |
| CDY22332 | Canola | plastid | 33.8 | 32.0 |
| CDY04311 | Canola | cytosol, nucleus, plastid | 33.48 | 31.53 |
| CDY41831 | Canola | nucleus | 34.34 | 30.36 |
| CDY68174 | Canola | nucleus | 34.56 | 30.32 |
| CDY23683 | Canola | cytosol, nucleus, plastid | 33.48 | 28.45 |
| CDY51501 | Canola | nucleus | 27.09 | 27.81 |
| CDY07349 | Canola | nucleus | 28.6 | 26.83 |
| CDY28550 | Canola | cytosol, plastid | 27.84 | 26.33 |
| CDY70429 | Canola | plastid | 25.03 | 26.04 |
| CDY25885 | Canola | cytosol | 25.79 | 23.56 |
| CDY02373 | Canola | nucleus | 26.0 | 23.46 |
| CDY55876 | Canola | cytosol | 25.57 | 22.8 |
Protein Annotations
| MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | GO:A0A078IX48 | UniProt:A0A078IX48 |
| InterPro:ArgoL1 | InterPro:ArgoL2 | InterPro:Argonaute_Mid_dom | InterPro:Argonaute_N | EnsemblPlants:CDY56413 | ProteinID:CDY56413 |
| ProteinID:CDY56413.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | EnsemblPlantsGene:GSBRNA2T00019563001 | InterPro:IPR003100 | InterPro:IPR003165 |
| InterPro:IPR036397 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 | PFAM:PF02171 | PFAM:PF08699 |
| PFAM:PF16486 | PFAM:PF16487 | PFAM:PF16488 | PFscan:PS50821 | PFscan:PS50822 | PANTHER:PTHR22891 |
| PANTHER:PTHR22891:SF20 | InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 | SMART:SM01163 |
| SUPFAM:SSF101690 | SUPFAM:SSF53098 | UniParc:UPI0004EEB81D | SEG:seg | : | : |
Description
BnaC04g54830DBnaC04g54830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IX48]
Coordinates
chrLK033487:-:7801..13452
Molecular Weight (calculated)
103370.0 Da
IEP (calculated)
8.828
GRAVY (calculated)
-0.447
Length
923 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSTGNGAD LESANGSGVT DALPPPPPVI PPNVEPVRVK TEAAEKKNLR VPMARPGFGS KGQKIQLLTN HFKVNVANLQ GHFYHYSVAL FYDDGRPVEQ
101: KGIGRKILDK VHQTYHSDLD GQEFAYDGEK TLFTFGALPS NKMDFSVVLE EVSSTRTNGN ASPNNGNEEP SDGDRKRLRR PNRSKSFRVE ISYAAKIPLQ
201: ALANAMRGQE SENSQEAIRV LDIILRQHAA RQGCLLVRQS FFHNDPSNCE PVGGNILGCR GFHSSFRTTQ GGMSLNMDVT TTMIIKPGPL VDFVIANQGV
301: NDPFNVDWSK AKRTLKNLRI KVSPSNQEYR ITGMSDKPCR EQMFEYRPRN APKNENRESE TVEISVYDYF LRERNLELQY SADLPCINVG KPKRPTYIPL
401: EHCTLIPLQR YTKALNTFQR SALVEKSRQK PQERMNVLSK ALKVSNYDTE PLLRSCGISI SSNFTQVEGR VLQAPKLKMG RGDELFPRNG RWNFNNKQFV
501: EPTKIDKWAV ANFSARCNVR QLVDDLMRIG GMKGVEIAPP FDVFEEGHQF RRAPPLIRVE KMFEEIQSKL PGAPQFILCL LPERKNCDIY GPWKKKNLTE
601: YGIVTQCMAP VRQPNDQYLT NCLLKINAKL GGLNSLLSVE RTPAFTVVSK VPTIILGMDV SHGSPGQSDV PSIAAVVSSR QWPLISKYRA SVRTQPSKAE
701: MIESLVKKNG TEDDGIIKEL LVDFYASSGK RKPENIIIFR DGVSESQFNQ VLNIELDQII EACKLLDENW NPKFLLLVAQ KNHHTKFFQT SSPDNVPPGT
801: IIDSKICHPK NNDFYLCAHA GMIGTTRPTH YHVLYDEIHF SPDELQELVH SLSYVYQRST TAISVVAPIC YAHLAAAQLG TFMKFEDQSE TSSSHGGVTA
901: PGPVSVAQLP KLKDNVANSM FFC
101: KGIGRKILDK VHQTYHSDLD GQEFAYDGEK TLFTFGALPS NKMDFSVVLE EVSSTRTNGN ASPNNGNEEP SDGDRKRLRR PNRSKSFRVE ISYAAKIPLQ
201: ALANAMRGQE SENSQEAIRV LDIILRQHAA RQGCLLVRQS FFHNDPSNCE PVGGNILGCR GFHSSFRTTQ GGMSLNMDVT TTMIIKPGPL VDFVIANQGV
301: NDPFNVDWSK AKRTLKNLRI KVSPSNQEYR ITGMSDKPCR EQMFEYRPRN APKNENRESE TVEISVYDYF LRERNLELQY SADLPCINVG KPKRPTYIPL
401: EHCTLIPLQR YTKALNTFQR SALVEKSRQK PQERMNVLSK ALKVSNYDTE PLLRSCGISI SSNFTQVEGR VLQAPKLKMG RGDELFPRNG RWNFNNKQFV
501: EPTKIDKWAV ANFSARCNVR QLVDDLMRIG GMKGVEIAPP FDVFEEGHQF RRAPPLIRVE KMFEEIQSKL PGAPQFILCL LPERKNCDIY GPWKKKNLTE
601: YGIVTQCMAP VRQPNDQYLT NCLLKINAKL GGLNSLLSVE RTPAFTVVSK VPTIILGMDV SHGSPGQSDV PSIAAVVSSR QWPLISKYRA SVRTQPSKAE
701: MIESLVKKNG TEDDGIIKEL LVDFYASSGK RKPENIIIFR DGVSESQFNQ VLNIELDQII EACKLLDENW NPKFLLLVAQ KNHHTKFFQT SSPDNVPPGT
801: IIDSKICHPK NNDFYLCAHA GMIGTTRPTH YHVLYDEIHF SPDELQELVH SLSYVYQRST TAISVVAPIC YAHLAAAQLG TFMKFEDQSE TSSSHGGVTA
901: PGPVSVAQLP KLKDNVANSM FFC
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.