CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02373	Canola	nucleus	97.07	84.16
AT1G31280.1	Thale cress	nucleus	83.88	73.37
CDY25885	Canola	cytosol	80.38	70.59
CDY55876	Canola	cytosol	79.93	68.5
AT1G31290.1	Thale cress	nucleus	69.79	51.84
PGSC0003DMT400054667	Potato	cytosol	39.91	48.49
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	49.27	46.1
KRH36727	Soybean	nucleus	23.22	45.47
VIT_10s0042g01150.t01	Wine grape	nucleus	49.61	44.94
KRG89432	Soybean	nucleus	48.93	44.93
VIT_10s0042g01200.t01	Wine grape	nucleus	50.28	44.87
Solyc02g069270.2.1	Tomato	cytosol	47.58	43.19
Solyc02g069260.2.1	Tomato	nucleus	49.15	41.84
PGSC0003DMT400054669	Potato	cytosol	48.82	41.2
Zm00001d002316_P003	Maize	plastid	39.23	40.65
Zm00001d026300_P001	Maize	nucleus	40.25	40.52
KRH11732	Soybean	nucleus	47.13	40.31
Solyc02g069280.2.1	Tomato	nucleus	43.29	38.44
TraesCS2A01G419800.2	Wheat	nucleus	29.88	37.59
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	33.03	36.49
PGSC0003DMT400054661	Potato	nucleus	39.68	35.92
Os04t0615700-01	Rice	nucleus, plasma membrane	39.68	34.04
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	9.02	33.9
KXG27113	Sorghum	nucleus	41.26	33.52
TraesCS2B01G439000.2	Wheat	nucleus, unclear	39.23	33.27
TraesCS2D01G417000.1	Wheat	nucleus	39.12	33.11
TraesCS2A01G419900.1	Wheat	nucleus	39.12	33.08
HORVU2Hr1G098650.1	Barley	nucleus	38.9	32.95
CDY72062	Canola	plastid	10.48	31.31
CDY51501	Canola	nucleus	31.57	31.15
CDY28550	Canola	cytosol, plastid	34.16	31.05
CDY22332	Canola	plastid	33.15	30.15
CDY07349	Canola	nucleus	33.37	30.08
CDX94724	Canola	plastid	33.03	29.87
HORVU2Hr1G098620.2	Barley	nucleus	34.27	29.83
CDX71410	Canola	nucleus	31.23	29.1
CDY04517	Canola	plastid	31.23	28.94
CDY04311	Canola	cytosol, nucleus, plastid	31.91	28.88
TraesCS2D01G416500.1	Wheat	nucleus	34.05	28.57
TraesCS2B01G438200.1	Wheat	nucleus	34.39	28.53
CDX92417	Canola	nucleus	20.52	28.26
CDY41831	Canola	nucleus	33.26	28.26
TraesCS2A01G419500.1	Wheat	nucleus	33.82	28.17
CDY68174	Canola	nucleus	33.15	27.95
CDX84712	Canola	nucleus	27.17	27.8
CDX79495	Canola	nucleus	27.06	27.68
CDX92406	Canola	nucleus	26.94	26.44
CDY59516	Canola	nucleus	26.94	26.38
CDY16587	Canola	nucleus	26.04	26.19
CDY23683	Canola	cytosol, nucleus, plastid	31.91	26.06
CDY09103	Canola	nucleus	26.16	25.61
CDX92405	Canola	nucleus	26.16	25.36
CDY56413	Canola	nucleus	26.04	25.03
CDY04475	Canola	nucleus	26.04	25.03
CDY48192	Canola	nucleus	25.82	24.84
CDX77061	Canola	nucleus	25.7	24.73
CDY16595	Canola	nucleus	22.66	21.85
CDY62055	Canola	nucleus	9.58	14.76
Os04t0615800-01	Rice	nucleus	0.34	0.57

Protein Annotations

MapMan:12.5.1.15.2	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:A0A078JUG5	UniProt:A0A078JUG5
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	EnsemblPlants:CDY70429	ProteinID:CDY70429	ProteinID:CDY70429.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	EnsemblPlantsGene:GSBRNA2T00003203001	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699
PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF4
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0004EDB691	SEG:seg	:	:

Description

BnaCnng68320DBnaCnng68320D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUG5]

Coordinates

chrLK042074:+:3..3171

Molecular Weight (calculated)

100705.0 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.464

Length

887 amino acids

Sequence
(BLAST)

001: IYMNHEFIFF FFNLTGSEIT NPRPSQVASS SSDKKVQVVS SSSARKEPMK RPDKGGVVAV RRVNLLVNHF QVNINPQSVI RHYDVEIKGE NPTKKISRFE
101: LSMVRDKLFT DNPHQFPFAM TAYDGQKNIF SAAELPTGSY KVDFPKTDET RARSYTFTIK QVNELKLRDL KEYMSGGSSF NPRDVFQGMD VVMKEHPSKC
201: MITVGKSFFT RETERDEELG YGIAAAKGYR HTLKPTQQGL SLCLDYSVLA FRKSMSVIEY LKLYFDWPDL RQFRNARRNV EKELTGLKVT VTHRKNKQKL
301: TIVGLSREDT KDIKFDVIDP EGNEPPRRTS IVEYFRIKYG RDIVHKDIPC LDLGKNGRQN LVPMEFCVLV EGQVYPKDDL DKNSALWLKK LSLVNPRQRK
401: DNILKMIKSK EGPSGGEITG NFGMKVDTNM TRVEGRILKA PALKLAERGR AVREEPNPRQ NNQWNLMRKG VTRGSVIKHW AVLDFTASER FNKMPNDFVN
501: NLINRCWTLG MQLEPPIVYK SSRMDTLSNA NALEELLRNV IDEAHRNHGG ARPTLILCAM TGRVDGYKTL KWIAETKLGL VTQCFLTGSA TKGGDQYRAN
601: LALKINAKVG GSNVELMDTF SFFRKDDQVM FIGADVNHPA SRDKLSPSIV AVVGTLNWPE ANRYAARVIA QPHRKEEIQG FGETCLELVK AHVQSTGKRP
701: NKIVIFRDGV SDGQFDMVLN VELLDVKLTF EKNGYNPKIT VIVAQKRHQT RFFPATDNDG SDKGNVPSGT VVDTKVIHPF EYDFYLCSHH GGIGTSKPTH
801: YYTLWDELGF TSDQVQKLIF EMCFTFTRCT KPVSLVPPVY YADMVAYRGR MYHEASSREK NIRQQPRGAS SSLASSFSSL TSVMFFV

Best Arabidopsis Sequence Match ( AT1G31280.1 )
(BLAST)

0001: MERGGYRGGR GDGRGRGGRG YGGGGGGGEQ GRDRGYGGGE QGRGRGSERG GGNRGQGRGE QQDFRSQSQR GPPPGHGGRG TTQFQQPRPQ VAPQPSQAPA
0101: SYAGSVGGVA GRGAWGRKPQ VPSDSASPST STTVVSEPVR VAEVMNLKPS VQVATSDRKE PMKRPDRGGV VAVRRVNLYV NHYKVNFNPE SVIRHYDVEI
0201: KGEIPTKKVS RFELAMVRDK VFTDNPDEFP LAMTAYDGQK NIFSAVELPT GSYKVEYPKT EEMRGRSYTF TIKQVNVLKL GDLKEYMTGR SSFNPRDVLQ
0301: GMDVVMKEHP SKCMITVGKS FFTRETEPDE DFRFGVIAAK GYRHTLKPTA QGLSLCLDYS VLAFRKAMSV IEYLKLYFNW SDMRQFRRRD VEEELIGLKV
0401: TVNHRKNKQK LTIVGLSMQN TKDIKFDLID QEGNEPPRKT SIVEYFRIKY GRHIVHKDIP CLDLGKNGRQ NFVPMEFCDL VEGQIYPKDN LDKDSALWLK
0501: KLSLVNPQQR QRNIDKMIKA RNGPSGGEII GNFGLKVDTN MTPVEGRVLK APSLKLAERG RVVREEPNPR QNNQWNLMKK GVTRGSIVKH WAVLDFTASE
0601: RFNKMPNDFV DNLIDRCWRL GMQMEAPIVY KTSRMETLSN GNAIEELLRS VIDEASRKHG GARPTLVLCA MSRKDDGYKT LKWIAETKLG LVTQCFLTGP
0701: ATKGGDQYRA NLALKMNAKV GGSNVELMDT FSFFKKEDEV MFIGADVNHP AARDKMSPSI VAVVGTLNWP EANRYAARVI AQPHRKEEIQ GFGDACLELV
0801: KAHVQATGKR PNKIVIFRDG VSDAQFDMVL NVELLDVKLT FEKNGYNPKI TVIVAQKRHQ TRFFPATNND GSDKGNVPSG TVVDTKVIHP YEYDFYLCSH
0901: HGGIGTSKPT HYYTLWDELG FTSDQVQKLI FEMCFTFTRC TKPVSLVPPV YYADMVAFRG RMYHEASSRE KNFKQPRGAS TSAASLASSL SSLTIEDKAI
1001: FKLHAELENV MFFV

Arabidopsis Description

AGO2Protein argonaute 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.