CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72062	Canola	plastid	41.46	89.9
CDY16587	Canola	nucleus	89.91	65.65
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	22.2	60.59
TraesCS7D01G458800.1	Wheat	nucleus	43.32	59.87
CDX92405	Canola	nucleus	80.9	56.94
PGSC0003DMT400039204	Potato	cytosol	13.2	56.67
CDX92406	Canola	nucleus	76.71	54.65
CDY59516	Canola	nucleus	76.4	54.3
CDY09103	Canola	nucleus	74.38	52.87
AT5G21030.2	Thale cress	cytosol	68.63	51.76
CDY16595	Canola	nucleus	73.14	51.2
Os01t0275200-00	Rice	golgi, peroxisome, plastid	36.34	50.11
Zm00001d008249_P012	Maize	nucleus	63.35	45.33
Zm00001d040429_P012	Maize	nucleus	63.2	45.17
GSMUA_Achr9P05150_001	Banana	nucleus	64.13	45.14
CDY04475	Canola	nucleus	64.29	44.85
CDY56413	Canola	nucleus	64.13	44.75
Os01t0275600-01	Rice	nucleus	62.73	44.69
CDY48192	Canola	nucleus	63.98	44.69
CDX77061	Canola	nucleus	63.82	44.58
OQU86696	Sorghum	nucleus	62.11	44.44
TraesCS3A01G188400.1	Wheat	nucleus	63.2	44.43
HORVU3Hr1G038830.1	Barley	nucleus	63.35	44.25
Os04t0151800-02	Rice	nucleus	62.58	44.24
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	63.2	43.11
TraesCS7B01G437900.1	Wheat	cytosol	53.42	42.63
EES18816	Sorghum	nucleus	59.63	42.24
TraesCS7A01G521000.1	Wheat	nucleus	53.11	42.17
TraesCS7A01G533100.1	Wheat	cytosol	58.7	41.95
TraesCS1D01G453600.1	Wheat	nucleus	59.32	41.43
TraesCS1A01G445500.1	Wheat	golgi, unclear	59.47	41.41
Zm00001d039214_P025	Maize	nucleus	59.32	41.34
TraesCS1B01G480100.1	Wheat	nucleus	59.47	41.32
CDX84712	Canola	nucleus	54.97	40.83
CDX79495	Canola	nucleus	54.81	40.72
TraesCS3D01G191600.5	Wheat	nucleus	63.2	40.62
TraesCS7D01G520400.1	Wheat	nucleus	57.14	40.48
TraesCS7B01G450300.1	Wheat	nucleus	57.76	40.48
EES00570	Sorghum	nucleus	56.06	40.2
TraesCS7B01G437700.1	Wheat	nucleus	54.04	39.59
TraesCS7B01G450200.2	Wheat	nucleus	56.06	38.98
Bra002349.1-P	Field mustard	nucleus	93.94	35.57
TraesCS7B01G373400.1	Wheat	nucleus	41.77	34.22
Solyc03g111760.2.1	Tomato	mitochondrion	47.52	33.41
CDY62055	Canola	nucleus	29.5	32.99
HORVU7Hr1G107770.1	Barley	nucleus	22.83	24.58
CDY22332	Canola	plastid	36.49	24.1
CDX94724	Canola	plastid	36.65	24.06
CDY04311	Canola	cytosol, nucleus, plastid	36.18	23.78
CDX71410	Canola	nucleus	34.63	23.42
CDY04517	Canola	plastid	34.47	23.2
CDY68174	Canola	nucleus	37.27	22.81
CDY41831	Canola	nucleus	36.96	22.8
CDY23683	Canola	cytosol, nucleus, plastid	36.02	21.36
CDY70429	Canola	plastid	28.26	20.52
CDY51501	Canola	nucleus	27.33	19.58
CDY28550	Canola	cytosol, plastid	29.5	19.47
CDY07349	Canola	nucleus	29.04	19.0
CDY25885	Canola	cytosol	28.73	18.32
CDY02373	Canola	nucleus	28.42	17.89
CDY55876	Canola	cytosol	28.57	17.78
TraesCS7D01G458900.1	Wheat	mitochondrion	0.16	0.55

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:A0A078DU29	InterPro:ArgoL2
EnsemblPlants:CDX92417	ProteinID:CDX92417	ProteinID:CDX92417.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00154179001	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822
PANTHER:PTHR22891	PANTHER:PTHR22891:SF20	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950
SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0004EECDF7	:	:	:

Description

BnaA10g14560D

Coordinates

chrLK031872:+:540414..545397

Molecular Weight (calculated)

73268.5 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.405

Length

644 amino acids

Sequence
(BLAST)

001: MKSLIFIQFY SLRDPSSIDW KKAERSLKNL RVKVDPSNRE YKITGLTRLP CRDQTFLWKK KQGNGETKEV EVTVYDYFTK HLEIELRHSG GLPCISVGKP
101: KRPTYFPIEQ CHLVSLQRYT KAPTIFQRSK LVKESVQKPQ EKMNVLNNAI KDSGYNNDPM LQDCGVRIDS DFTQVEGRVL PTPRLKVGNG EEFQPRDGRW
201: NFNNKKLVEP ATVTRWAVVN FSARCDTKRL ISDLIRCGKM KGINVDPPYK VVFQEDPYYR GAPANIRVEK MFEQMQSELR KEGIEGKPKF ILCILAEKKN
301: SLVYGPWKRR NLVEEGIVTQ CFAPTPKIND QYLTNVLLKI NAKLGGLNSL LAMERSPRAM MPLVTQVPTF IVGMDVSHGS PGQSDIPSVA AVVGSREWPL
401: ISKYRACVRT QSRKVEMIDN LFKPVTNEKG KQVDEGIFWE LLFDFYISSG KKRPEHIIIF RDGVSESQFN QVLSIELDQM MRACKFVEEN WEPKFTVIIA
501: QKNHHTKFFQ AEGPGNVPPG TIIDSKICHP RNNDFYLCAH NGMIGTTRPT HYHVLYDEIG FSTDDLQQLV HSLSYVYQRS TTAISVVAPI MYAHLAAAQM
601: ATAVKFEDSS ETSSRHGGIT TSEAELVPPM PKLNANVASS MFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.