Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| cytosol:
19685898
nucleus: 23777608 nucleus: 26035336 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
19685898
doi
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0506200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | Os05t0506200-01 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G188400.1 | Wheat | nucleus | 86.73 | 85.59 |
| HORVU3Hr1G038830.1 | Barley | nucleus | 86.61 | 84.92 |
| Zm00001d040429_P012 | Maize | nucleus | 84.07 | 84.35 |
| OQU86696 | Sorghum | nucleus | 83.19 | 83.56 |
| Zm00001d008249_P012 | Maize | nucleus | 82.96 | 83.33 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 86.84 | 83.16 |
| Os04t0151800-02 | Rice | nucleus | 80.2 | 79.58 |
| TraesCS3D01G191600.5 | Wheat | nucleus | 86.39 | 77.94 |
| PGSC0003DMT400070806 | Potato | nucleus | 24.45 | 75.68 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 73.56 | 72.84 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 73.56 | 72.68 |
| Solyc01g008960.2.1 | Tomato | nucleus | 72.46 | 72.06 |
| PGSC0003DMT400058471 | Potato | nucleus | 72.35 | 71.95 |
| KRH14678 | Soybean | nucleus | 71.35 | 71.19 |
| PGSC0003DMT400069459 | Potato | nucleus | 71.35 | 70.65 |
| Solyc06g073540.2.1 | Tomato | nucleus | 71.13 | 70.43 |
| KRH73469 | Soybean | nucleus | 70.46 | 70.31 |
| Os07t0265600-01 | Rice | cytosol, nucleus | 24.0 | 70.23 |
| VIT_08s0040g00070.t01 | Wine grape | nucleus | 70.46 | 69.39 |
| CDY72062 | Canola | plastid | 22.46 | 68.35 |
| Solyc01g096750.1.1 | Tomato | nucleus | 66.26 | 67.99 |
| KRG89867 | Soybean | nucleus | 69.8 | 66.63 |
| Solyc06g073530.1.1 | Tomato | nucleus | 66.15 | 66.15 |
| AT2G27040.1 | Thale cress | nucleus | 67.37 | 65.91 |
| CDY56413 | Canola | nucleus | 66.92 | 65.55 |
| CDY48192 | Canola | nucleus | 66.81 | 65.51 |
| Bra034318.1-P | Field mustard | nucleus | 66.7 | 65.4 |
| CDY04475 | Canola | nucleus | 66.7 | 65.33 |
| CDX77061 | Canola | nucleus | 66.59 | 65.29 |
| AT5G21150.1 | Thale cress | nucleus | 64.27 | 64.84 |
| Bra020152.1-P | Field mustard | nucleus | 64.93 | 64.79 |
| CDY09103 | Canola | nucleus | 64.82 | 64.68 |
| Bra002361.1-P | Field mustard | nucleus | 63.61 | 63.12 |
| CDX92417 | Canola | nucleus | 44.69 | 62.73 |
| VIT_13s0175g00140.t01 | Wine grape | nucleus | 61.39 | 62.71 |
| CDX92405 | Canola | nucleus | 62.94 | 62.19 |
| PGSC0003DMT400039204 | Potato | cytosol | 10.29 | 62.0 |
| CDY16587 | Canola | nucleus | 59.18 | 60.66 |
| CDX92406 | Canola | nucleus | 60.62 | 60.62 |
| AT5G21030.2 | Thale cress | cytosol | 56.97 | 60.3 |
| CDY59516 | Canola | nucleus | 60.4 | 60.26 |
| Bra002360.1-P | Field mustard | nucleus | 60.29 | 58.6 |
| Os01t0275200-00 | Rice | golgi, peroxisome, plastid | 30.2 | 58.46 |
| CDY16595 | Canola | nucleus | 55.86 | 54.89 |
| KRH56276 | Soybean | cytosol | 49.67 | 54.03 |
| Solyc03g111760.2.1 | Tomato | mitochondrion | 48.12 | 47.49 |
| CDY62055 | Canola | nucleus | 28.32 | 44.44 |
| Os03t0682200-00 | Rice | nucleus | 20.13 | 39.14 |
| Os03t0682600-00 | Rice | nucleus | 27.99 | 33.87 |
| Os07t0471300-01 | Rice | nucleus | 27.32 | 33.24 |
| Os06t0597400-01 | Rice | cytosol | 34.85 | 32.18 |
| Os02t0831600-01 | Rice | extracellular | 35.51 | 31.75 |
| Bra002349.1-P | Field mustard | nucleus | 58.3 | 30.98 |
| Os03t0789466-00 | Rice | cytosol, mitochondrion, nucleus | 15.49 | 30.63 |
| Os06t0729300-01 | Rice | nucleus | 34.62 | 30.15 |
| Os02t0169400-01 | Rice | nucleus | 29.2 | 30.14 |
| Os02t0672200-01 | Rice | cytosol | 35.84 | 29.94 |
| Os03t0800200-01 | Rice | plasma membrane | 34.18 | 29.21 |
| Os04t0566500-04 | Rice | nucleus | 35.4 | 29.06 |
| Os07t0188000-01 | Rice | nucleus | 32.74 | 28.14 |
| Os02t0616300-00 | Rice | vacuole | 9.29 | 25.38 |
| Os04t0615700-01 | Rice | nucleus, plasma membrane | 28.65 | 25.05 |
| Os03t0449200-00 | Rice | nucleus | 28.32 | 24.43 |
| Os03t0789500-01 | Rice | cytosol | 0.55 | 2.2 |
| Os04t0615800-01 | Rice | nucleus | 0.33 | 0.57 |
Protein Annotations
| MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | EntrezGene:4324438 | EMBL:AK064813 |
| InterPro:ArgoL1 | InterPro:ArgoL2 | InterPro:Argonaute_N | ProteinID:BAA88176.1 | ProteinID:BAF04636.1 | ProteinID:BAS71541.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0031047 | InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 | EnsemblPlantsGene:Os01g0275600 |
| EnsemblPlants:Os01t0275600-01 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 | PFAM:PF02171 | PFAM:PF08699 |
| PFAM:PF16486 | PFAM:PF16488 | PFscan:PS50821 | PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF56 |
| InterPro:Piwi | UniProt:Q9SDG8 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 | SMART:SM01163 |
| SUPFAM:SSF101690 | SUPFAM:SSF53098 | UniParc:UPI00000A9A0C | RefSeq:XP_015621073.1 | RefSeq:XP_015621074.1 | SEG:seg |
Description
ARGONAUTE 4ASimilar to Argonaute 4 protein. (Os01t0275600-01);Similar to Protein argonaute 4A. (Os01t0275600-02)
Coordinates
chr1:-:9631356..9638881
Molecular Weight (calculated)
100645.0 Da
IEP (calculated)
9.320
GRAVY (calculated)
-0.395
Length
904 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNSGEIEE LPPPPPLPPN AEPIKTDDTK KLSKPKRALM ARSGCGKKGQ PIQLLTNHFK VSLKAADEFF HHYYVNLKYE DDRPVDGKGI GRKVLDKLQQ
101: TYASELANKD FAYDGEKSLF TIGALPQVNN EFTVVLEDFN TGKSSANGGS PGNDSPGNDR KRVRRPYQTK TFKVELNFAA KIPMSAIAQA LRGQESENTQ
201: EAIRVIDIIL RQHSAKQGCL LVRQSFFHNN PSNFVDLGGG VMGCRGFHSS FRATQSGLSL NIDVSTTMIV KPGPVVDFLL ANQKVDHPNK IDWAKAKRAL
301: KNLRIKTSPA NTEYKIVGLS ERNCYEQMFT LKQRNGDGEP EGVEVSVYEY FVKNRGIELR YSGDFPCINV GKPKRPTYFP IELCSLVPLQ RYTKALSTLQ
401: RSSLVEKSRQ KPEERMSVLS DVLKRSNYDS EPMLNSCGIS IARGFTQVAG RVLQAPKLKA GNGEDLFARN GRWNFNNKRL IKASSIEKWA VVNFSARCNI
501: RDLVRDIIKC GGMKGIKVED PFDVIEEDPS MRRAPAARRV DGMIDKMQKK LPGQPKFLLC VLAERKNSDI YGPWKRKCLA EFGIITQCVA PTRVNDQYIT
601: NVLLKINAKL GGLNSLLQIE TSPSIPLVSK VPTIILGMDV SHGSPGQSDI PSIAAVVSSR EWPLVSKYRA SVRSQSPKLE MIDGLFKPQG AQEDDGLIRE
701: LLVDFYTSTG KRKPDQVIIF RDGVSESQFT QVLNIELDQI IEACKFLDEN WSPKFTLIVA QKNHHTKFFV PGSQNNVPPG TVVDNAVCHP RNNDFYMCAH
801: AGMIGTTRPT HYHILHDEIG FSADDLQELV HSLSYVYQRS TTAISVVAPI CYAHLAAAQV SQFIKFDEMS ETSSSHGGHT SAGSAPVPEL PRLHNKVRSS
901: MFFC
101: TYASELANKD FAYDGEKSLF TIGALPQVNN EFTVVLEDFN TGKSSANGGS PGNDSPGNDR KRVRRPYQTK TFKVELNFAA KIPMSAIAQA LRGQESENTQ
201: EAIRVIDIIL RQHSAKQGCL LVRQSFFHNN PSNFVDLGGG VMGCRGFHSS FRATQSGLSL NIDVSTTMIV KPGPVVDFLL ANQKVDHPNK IDWAKAKRAL
301: KNLRIKTSPA NTEYKIVGLS ERNCYEQMFT LKQRNGDGEP EGVEVSVYEY FVKNRGIELR YSGDFPCINV GKPKRPTYFP IELCSLVPLQ RYTKALSTLQ
401: RSSLVEKSRQ KPEERMSVLS DVLKRSNYDS EPMLNSCGIS IARGFTQVAG RVLQAPKLKA GNGEDLFARN GRWNFNNKRL IKASSIEKWA VVNFSARCNI
501: RDLVRDIIKC GGMKGIKVED PFDVIEEDPS MRRAPAARRV DGMIDKMQKK LPGQPKFLLC VLAERKNSDI YGPWKRKCLA EFGIITQCVA PTRVNDQYIT
601: NVLLKINAKL GGLNSLLQIE TSPSIPLVSK VPTIILGMDV SHGSPGQSDI PSIAAVVSSR EWPLVSKYRA SVRSQSPKLE MIDGLFKPQG AQEDDGLIRE
701: LLVDFYTSTG KRKPDQVIIF RDGVSESQFT QVLNIELDQI IEACKFLDEN WSPKFTLIVA QKNHHTKFFV PGSQNNVPPG TVVDNAVCHP RNNDFYMCAH
801: AGMIGTTRPT HYHILHDEIG FSADDLQELV HSLSYVYQRS TTAISVVAPI CYAHLAAAQV SQFIKFDEMS ETSSSHGGHT SAGSAPVPEL PRLHNKVRSS
901: MFFC
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.