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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 4
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:nucleus
extracellular: 24083427
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G081900.1 Wheat plastid 82.2 84.97
TraesCS6B01G466700.1 Wheat nucleus 81.9 81.74
TraesCS6D01G403900.1 Wheat plastid 83.38 79.91
Os06t0729300-01 Rice nucleus 80.71 78.61
VIT_19s0014g01840.t01 Wine grape cytosol, nucleus, plastid 58.36 75.93
Solyc03g098280.2.1 Tomato nucleus 70.62 72.86
OQU86027 Sorghum plastid 79.53 72.83
PGSC0003DMT400069313 Potato cytosol 73.99 70.97
Solyc06g072300.2.1 Tomato nucleus 73.99 70.97
CDY04311 Canola cytosol, nucleus, plastid 68.25 70.41
VIT_17s0053g00680.t01 Wine grape nucleus 73.49 68.48
AT1G48410.2 Thale cress nucleus 70.82 68.19
Os04t0566500-04 Rice nucleus 73.79 67.76
CDY68174 Canola nucleus 70.43 67.68
Os02t0672200-01 Rice cytosol 72.4 67.65
CDY41831 Canola nucleus 69.83 67.62
Bra014136.1-P Field mustard nucleus 70.33 65.89
Os06t0597400-01 Rice cytosol 63.5 65.58
PGSC0003DMT400079716 Potato nucleus 73.0 65.48
Bra032254.1-P Field mustard nucleus 70.82 64.45
CDY23683 Canola cytosol, nucleus, plastid 69.14 64.36
Os03t0682200-00 Rice nucleus 28.29 61.51
Os03t0789466-00 Rice cytosol, mitochondrion, nucleus 24.23 53.61
Os02t0169400-01 Rice nucleus 45.6 52.63
Os03t0682600-00 Rice nucleus 38.67 52.34
Os07t0471300-01 Rice nucleus 37.29 50.74
Os03t0800200-01 Rice plasma membrane 51.83 49.53
Os07t0188000-01 Rice nucleus 48.17 46.29
Os07t0265600-01 Rice cytosol, nucleus 14.05 45.95
Os02t0616300-00 Rice vacuole 12.86 39.27
Os04t0151800-02 Rice nucleus 33.14 36.77
Os01t0275600-01 Rice nucleus 31.75 35.51
Os03t0449200-00 Rice nucleus 34.03 32.82
Os04t0615700-01 Rice nucleus, plasma membrane 30.37 29.69
Os01t0275200-00 Rice golgi, peroxisome, plastid 13.35 28.91
Os03t0789500-01 Rice cytosol 0.69 3.08
Os04t0615800-01 Rice nucleus 0.2 0.38
Protein Annotations
MapMan:16.10.3Gene3D:2.170.260.10Gene3D:3.30.420.10Gene3D:3.40.50.2300EntrezGene:4331253EMBL:AB081951
EMBL:AK103279InterPro:ArgoL1InterPro:ArgoL2InterPro:Argonaute_Mid_domInterPro:Argonaute_NProteinID:BAD23006.1
ProteinID:BAF10535.1ProteinID:BAS81760.1ProteinID:EEE58113.1GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005515GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0031047InterPro:IPR003100
InterPro:IPR003165InterPro:IPR036397EnsemblPlantsGene:Os02g0831600EnsemblPlants:Os02t0831600-01InterPro:PAZ_domInterPro:PAZ_dom_sf
PFAM:PF02170PFAM:PF02171PFAM:PF08699PFAM:PF16486PFAM:PF16487PFAM:PF16488
PFscan:PS50821PFscan:PS50822PANTHER:PTHR22891PANTHER:PTHR22891:SF34InterPro:PiwiUniProt:Q6K972
InterPro:RNaseH-like_sfInterPro:RNaseH_sfSMART:SM00949SMART:SM00950SMART:SM01163SUPFAM:SSF101690
SUPFAM:SSF53098UniParc:UPI00003B04EERefSeq:XP_015626468.1RefSeq:XP_015626469.1SEG:seg:
Description
ARGONAUTE 1CAGO1 homologous protein. (Os02t0831600-01)
Coordinates
chr2:-:35761332..35768388
Molecular Weight (calculated)
113151.0 Da
IEP (calculated)
9.884
GRAVY (calculated)
-0.458
Length
1011 amino acids
Sequence
(BLAST)
0001: MASRRPTHRH HTEAPDPGGR GRGRGRAARY AQPQPQPQQQ QQQQGRGCRA RGASPPPPPQ QQQQQQPRST PTRATTVTVA SSSSTTATAS SSPLAPELRQ
0101: AIMEAPRPSE LAQPSPTPPQ EQPVDAATTT PHHIPSSSKS IRFPLRPGKG TIGTRCMVKA NHFFAHLPNK DLHHYDVSIT PEVTSRIVNR AVIKELVNLY
0201: KASYLGGRLP AYDGRKSLYT AGPLPFTSQE FQITLLDDDD GSGSERRQRT FRVVIKFAAR ADLHRLELFL AGRHAEAPQE ALQVLDIVLR ELPSARYAPF
0301: GRSFFSPYLG RRQPLGEGLE SWRGFYQSIR PTQMGLSLNI DMSATAFIEP LPVIDFVAQL LNSDIHSRPL SDAERVKIKK ALRGVKVEVT HRGNMRRKYR
0401: ISGLTIQPTR ELTFPVDEGG TVKSVVQYFQ ETYGFAIQHT YLPCLTVQRL NYLPMEVCKI VEGQRYSKRL NQNQIRALLE ETCQHPRDRE RDIIKMVKHN
0501: AYQDDPYAKE FGIKISDRLA SVEARILPAP RLKYNETGRE KDCLPRVGQW NMMNKKMVNG GKVRSWMCVN FARNVQESVV RGFCHELALM CQASGMDFAP
0601: EPILPPLNAH PDQVERALKA RYHDAMNVLG PQRRELDLLI GILPDNNGSL YGDLKRVCEI DLGIVSQCCC TKQVFKMNKQ ILANLALKIN VKVGGRNTVL
0701: VDAVSRRIPL VTDRPTIIFG ADVTHPHPGE DSSPSIAAVV ASQDWPEVTK YAGLVSAQAH RQELIEDLYK IWQDPQRGTV SGGMIRELLI SFKRSTGEKP
0801: QRIIFYRDGV SEGQFYQVLL YELNAIRKAC ASLETNYQPK VTFIVVQKRH HTRLFAHNHN DQNSVDRSGN ILPGTVVDSK ICHPTEFDFY LCSHAGIKGT
0901: SRPAHYHVLW DENNFTADAL QILTNNLCYT YARCTRSVSI VPPAYYAHLA AFRARFYMEP DTSDSSSVVS GPGVRGPLSG SSTSRTRAPG GAAVKPLPAL
1001: KDSVKRVMFY C
Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)
0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC
Arabidopsis Description
AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.