Factsheet for Os02t0672200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931
cytosol: 19685898
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99173	Soybean	cytosol	12.75	88.46
Os04t0566500-04	Rice	nucleus	85.49	84.01
TraesCS6A01G254600.2	Wheat	plastid	82.07	81.84
TraesCS6B01G270900.1	Wheat	nucleus	81.15	80.92
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	57.67	80.31
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	81.42	79.16
Solyc03g098280.2.1	Tomato	nucleus	70.15	77.45
Solyc06g072300.2.1	Tomato	nucleus	74.77	76.76
PGSC0003DMT400069313	Potato	cytosol	74.68	76.66
CDY04311	Canola	cytosol, nucleus, plastid	68.76	75.92
CDY41831	Canola	nucleus	72.92	75.57
CDY68174	Canola	nucleus	73.47	75.57
AT1G48410.2	Thale cress	nucleus	73.29	75.52
VIT_17s0053g00680.t01	Wine grape	nucleus	75.42	75.21
Bra014136.1-P	Field mustard	nucleus	73.66	73.86
Os02t0831600-01	Rice	extracellular	67.65	72.4
GSMUA_Achr7P04100_001	Banana	extracellular	16.36	71.37
Os06t0729300-01	Rice	nucleus	68.11	71.0
PGSC0003DMT400079716	Potato	nucleus	73.94	70.98
Bra032254.1-P	Field mustard	nucleus	72.74	70.84
CDY23683	Canola	cytosol, nucleus, plastid	71.07	70.81
Os06t0597400-01	Rice	cytosol	62.01	68.54
Os03t0682200-00	Rice	nucleus	27.36	63.66
Os02t0169400-01	Rice	nucleus	45.19	55.82
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	23.57	55.8
Os03t0682600-00	Rice	nucleus	37.71	54.62
Os03t0800200-01	Rice	plasma membrane	51.76	52.93
Os07t0471300-01	Rice	nucleus	35.67	51.95
Os07t0188000-01	Rice	nucleus	48.15	49.52
Os07t0265600-01	Rice	cytosol, nucleus	13.22	46.28
Os02t0616300-00	Rice	vacuole	12.11	39.58
Os04t0151800-02	Rice	nucleus	31.61	37.54
Os01t0275600-01	Rice	nucleus	29.94	35.84
Os03t0449200-00	Rice	nucleus	32.16	33.21
Os01t0275200-00	Rice	golgi, peroxisome, plastid	13.49	31.26
Os04t0615700-01	Rice	nucleus, plasma membrane	29.85	31.24
Os03t0789500-01	Rice	cytosol	0.65	3.08
Os04t0615800-01	Rice	nucleus	0.18	0.38

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	EntrezGene:4330281	EMBL:AK111553
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ProteinID:BAD27856.1
ProteinID:BAF09618.1	ProteinID:BAS80241.1	ProteinID:BAS80242.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	EnsemblPlantsGene:Os02g0672200	EnsemblPlants:Os02t0672200-01	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi
UniProt:Q6EU14	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI00003CE52F	RefSeq:XP_015626096.1	SEG:seg	:

Description

ARGONAUTE 1ASimilar to AGO1 homologous protein. (Os02t0672200-01);Similar to Protein argonaute 1A. (Os02t0672200-02)

Coordinates

chr2:-:27330175..27341732

Molecular Weight (calculated)

120456.0 Da

IEP (calculated)

9.749

GRAVY (calculated)

-0.511

Length

1082 amino acids

Sequence
(BLAST)

0001: MAFQLDNGYY SHQALAMMRK KKTEPRNAGE SSGTQQATGA PGRGPSQRPE RAQQHGGGGW QPANPQYAQQ AGRGGGQHQG RGGRYQGRGG PTSHQPGGGP
0101: VEYQAHEYYG RGVQRQGGMP QHRSGSGGHG VPASPSRTVP ELHQASQDQY QATVVAPSPS RTGPSSLPVE ASSEEVQHQF QELAIQGQSP TSQAIQPAPP
0201: SSKSVRFPMR PGKGTFGDRC IVKANHFFAE LPDKDLHQYD VSITPEVPSR GVNRAVIGEI VTQYRQSHLG GRLPVYDGRK SLYTAGPLPF TSRTFDVILQ
0301: DEEESLAVGQ GAQRRERPFK VVIKFAARAD LHHLAMFLAG RQADAPQEAL QVLDIVLREL PTARYSPVAR SFYSPNLGRR QQLGEGLESW RGFYQSIRPT
0401: QMGLSLNIDM SSTAFIEPLP VIDFVAQLLN RDISVRPLSD ADRVKIKKAL RGVKVEVTHR GNMRRKYRIS GLTSQATREL SFPIDNHGTV KTVVQYFQET
0501: YGFNIKHTTL PCLQVGNQQR PNYLPMEVCK IVEGQRYSKR LNEKQITALL KVTCQRPQER ELDILQTVHH NAYHQDPYAQ EFGIRIDERL ASVEARVLPP
0601: PWLKYHDSGR EKDVLPRIGQ WNMMNKKMVN GGRVNNWTCI NFSRHVQDNA ARSFCRELAI MCQISGMDFS IDPVVPLVTA RPEHVERALK ARYQEAMNIL
0701: KPQGGELDLL IAILPDNNGS LYGDLKRICE TDLGLVSQCC LTKHVFKMSK QYLANVALKI NVKVGGRNTV LVDALTRRIP LVSDRPTIIF GADVTHPHPG
0801: EDSSPSIAAV VASQDWPEVT KYAGLVSAQA HRQELIQDLF KVWKDPQRGT VSGGMIRELL ISFKRATGQK PQRIIFYRDG VSEGQFYQVL FYELDAIRKA
0901: CASLEADYQP PVTFVVVQKR HHTRLFANNH KDQRTVDRSG NILPGTVVDS KICHPTEFDF YLCSHAGIQG TSRPAHYHVL WDENKFTADG LQTLTNNLCY
1001: TYARCTRSVS IVPPAYYAHL AAFRARFYME PDTSDSGSMA SGAHTRGGGP LPGARSTKPA GNVAVRPLPD LKENVKRVMF YC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.