Factsheet for Os04t0566500-04

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

cytosol: 19685898
nucleus: 23303719
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044183_P001	Maize	cytosol	15.35	93.37
OQU82149	Sorghum	nucleus	90.92	92.94
Zm00001d037833_P001	Maize	mitochondrion	20.8	92.34
TraesCS2D01G400200.1	Wheat	nucleus	90.28	90.45
KRG99173	Soybean	cytosol	12.81	90.38
TraesCS2B01G421000.2	Wheat	nucleus	90.19	90.11
TraesCS2A01G403100.4	Wheat	nucleus	91.1	89.55
Zm00001d002650_P003	Maize	nucleus	90.1	88.1
Zm00001d026111_P014	Maize	nucleus	87.19	87.67
Os02t0672200-01	Rice	cytosol	84.01	85.49
EES18841	Sorghum	nucleus	85.83	85.21
Zm00001d011096_P059	Maize	nucleus	84.29	83.75
TraesCSU01G065300.1	Wheat	nucleus	89.46	82.63
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	58.22	82.5
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	89.37	81.32
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	84.56	81.03
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	88.83	80.83
Solyc06g072300.2.1	Tomato	nucleus	76.66	80.08
PGSC0003DMT400069313	Potato	cytosol	76.57	79.98
Solyc03g098280.2.1	Tomato	nucleus	70.66	79.39
HORVU7Hr1G007000.14	Barley	nucleus	86.1	77.9
CDY04311	Canola	cytosol, nucleus, plastid	69.12	77.65
VIT_17s0053g00680.t01	Wine grape	nucleus	76.39	77.51
CDY41831	Canola	nucleus	72.93	76.92
AT1G48410.2	Thale cress	nucleus	73.3	76.86
CDY68174	Canola	nucleus	73.3	76.71
Bra014136.1-P	Field mustard	nucleus	73.66	75.16
Zm00001d025331_P002	Maize	cytosol	37.51	74.82
Zm00001d025073_P001	Maize	cytosol	26.07	73.97
Os02t0831600-01	Rice	extracellular	67.76	73.79
PGSC0003DMT400079716	Potato	nucleus	74.93	73.2
GSMUA_Achr7P04100_001	Banana	extracellular	16.44	72.98
Os06t0729300-01	Rice	nucleus	68.66	72.83
Bra032254.1-P	Field mustard	nucleus	73.12	72.46
CDY23683	Canola	cytosol, nucleus, plastid	71.39	72.38
Os06t0597400-01	Rice	cytosol	62.03	69.77
Os03t0682200-00	Rice	nucleus	26.79	63.44
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	23.34	56.24
Os02t0169400-01	Rice	nucleus	44.41	55.82
Os03t0682600-00	Rice	nucleus	36.78	54.22
Os03t0800200-01	Rice	plasma membrane	51.5	53.59
Os07t0471300-01	Rice	nucleus	35.33	52.36
Os07t0188000-01	Rice	nucleus	47.87	50.1
Os07t0265600-01	Rice	cytosol, nucleus	12.9	45.95
Os02t0616300-00	Rice	vacuole	11.81	39.27
Os04t0151800-02	Rice	nucleus	30.43	36.77
Os01t0275600-01	Rice	nucleus	29.06	35.4
Os03t0449200-00	Rice	nucleus	32.06	33.68
Os04t0615700-01	Rice	nucleus, plasma membrane	29.88	31.82
Os01t0275200-00	Rice	golgi, peroxisome, plastid	12.9	30.41
Os03t0789500-01	Rice	cytosol	0.54	2.64
Os04t0615800-01	Rice	nucleus	0.18	0.38

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	EMBL:AK111587	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ProteinID:BAS90531.1	ProteinID:CAE02070.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EnsemblPlantsGene:Os04g0566500	EnsemblPlants:Os04t0566500-04	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
UniParc:UPI000021C82B	RefSeq:XP_015636292.1	SEG:seg	:	:	:

Description

ARGONAUTE 1BSimilar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-01);Similar to Isoform 2 of Protein argonaute 1B. (Os04t0566500-02);Similar to Argonaute protein. (Os04t0566500-03);Similar to Argonaute protein. (Os04t0566500-04)

Coordinates

chr4:-:28426529..28435892

Molecular Weight (calculated)

121640.0 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.538

Length

1101 amino acids

Sequence
(BLAST)

0001: MVKKKRTGSG STGESSGEAP GAPGHGSSQR AERGPQQHGG GRGWVPQHGG RGGGQYQGRG GHYQGRGGQG SHHPGGGPPE YQGRGGPGSH HPGGGPPDYQ
0101: GRGGSGSHHP GGGPPEYQPR DYQGRGGPRP RGGMPQPYYG GPRGSGGRSV PSGSSRTVPE LHQAPHVQYQ APMVSPTPSG AGSSSQPAAE VSSGQVQQQF
0201: QQLATRDQSS TSQAIQIAPP SSKSVRFPLR PGKGTYGDRC IVKANHFFAE LPDKDLHQYD VSITPEVTSR GVNRAVMFEL VTLYRYSHLG GRLPAYDGRK
0301: SLYTAGPLPF ASRTFEITLQ DEEDSLGGGQ GTQRRERLFR VVIKFAARAD LHHLAMFLAG RQADAPQEAL QVLDIVLREL PTTRYSPVGR SFYSPNLGRR
0401: QQLGEGLESW RGFYQSIRPT QMGLSLNIDM SSTAFIEPLP VIDFVAQLLN RDISVRPLSD SDRVKIKKAL RGVKVEVTHR GNMRRKYRIS GLTSQATREL
0501: SFPVDDRGTV KTVVQYFLET YGFSIQHTTL PCLQVGNQQR PNYLPMEVCK IVEGQRYSKR LNEKQITALL KVTCQRPQER ELDILRTVSH NAYHEDQYAQ
0601: EFGIKIDERL ASVEARVLPP PRLKYHDSGR EKDVLPRVGQ WNMMNKKMVN GGRVNNWACI NFSRNVQDSA ARGFCHELAI MCQISGMDFA LEPVLPPLTA
0701: RPEHVERALK ARYQDAMNML RPQGRELDLL IVILPDNNGS LYGDLKRICE TDLGLVSQCC LTKHVFKMSK QYLANVALKI NVKVGGRNTV LVDALTRRIP
0801: LVSDRPTIIF GADVTHPHPG EDSSPSIAAV VASQDWPEVT KYAGLVSAQA HRQELIQDLF KVWQDPHRGT VTGGMIKELL ISFKRATGQK PQRIIFYRDG
0901: VSEGQFYQVL LYELDAIRKA CASLEPNYQP PVTFVVVQKR HHTRLFANNH NDQRTVDRSG NILPGTVVDS KICHPTEFDF YLCSHAGIQG TSRPAHYHVL
1001: WDENKFTADE LQTLTNNLCY TYARCTRSVS IVPPAYYAHL AAFRARFYME PETSDSGSMA SGAATSRGLP PGVRSARVAG NVAVRPLPAL KENVKRVMFY
1101: C

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.