Factsheet for VIT_19s0014g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044183_P001	Maize	cytosol	19.69	84.53
Zm00001d037833_P001	Maize	mitochondrion	25.74	80.65
TraesCS7D01G552900.1	Wheat	mitochondrion	41.57	70.99
TraesCS7D01G553200.1	Wheat	nucleus, plastid	42.86	69.52
VIT_17s0053g00680.t01	Wine grape	nucleus	94.59	67.74
Solyc03g098280.2.1	Tomato	nucleus	83.91	66.53
Zm00001d025073_P001	Maize	cytosol	32.69	65.46
GSMUA_AchrUn_...	Banana	cytosol	16.22	64.29
KRH38925	Soybean	endoplasmic reticulum	87.39	64.18
GSMUA_Achr7P04100_001	Banana	extracellular	20.46	64.11
KRH09472	Soybean	nucleus	86.62	63.91
Solyc06g072300.2.1	Tomato	nucleus	86.62	63.85
PGSC0003DMT400069313	Potato	cytosol	86.49	63.76
Zm00001d025331_P002	Maize	cytosol	44.66	62.86
GSMUA_Achr3P13970_001	Banana	nucleus	85.33	62.55
CDY04311	Canola	cytosol, nucleus, plastid	78.76	62.45
GSMUA_AchrUn_...	Banana	mitochondrion	83.01	60.62
TraesCSU01G081900.1	Wheat	plastid	75.68	60.12
AT1G48410.2	Thale cress	nucleus	80.57	59.62
CDY68174	Canola	nucleus	80.69	59.6
CDY41831	Canola	nucleus	79.92	59.48
GSMUA_Achr1P17950_001	Banana	nucleus	80.69	59.43
OQU82149	Sorghum	nucleus	81.47	58.77
PGSC0003DMT400079716	Potato	nucleus	85.2	58.74
GSMUA_Achr1P07120_001	Banana	cytosol	79.79	58.66
VIT_11s0016g04620.t01	Wine grape	cytosol	68.21	58.56
TraesCS2A01G258200.1	Wheat	cytosol	50.06	58.41
GSMUA_Achr3P27070_001	Banana	nucleus	80.82	58.36
Os02t0831600-01	Rice	extracellular	75.93	58.36
Bra014136.1-P	Field mustard	nucleus	80.95	58.29
Os04t0566500-04	Rice	nucleus	82.5	58.22
TraesCS6B01G466700.1	Wheat	nucleus	75.68	58.05
VIT_05s0020g04190.t01	Wine grape	nucleus	65.25	57.74
Os02t0672200-01	Rice	cytosol	80.31	57.67
TraesCS2D01G400200.1	Wheat	nucleus	81.34	57.51
TraesCS2B01G421000.2	Wheat	nucleus	81.34	57.35
Os06t0729300-01	Rice	nucleus	76.32	57.13
Bra032254.1-P	Field mustard	nucleus	81.21	56.8
GSMUA_AchrUn_...	Banana	cytosol	22.14	56.58
CDY23683	Canola	cytosol, nucleus, plastid	78.76	56.35
TraesCS2A01G403100.4	Wheat	nucleus	81.21	56.34
KXG20965	Sorghum	nucleus	75.8	56.2
Zm00001d002650_P003	Maize	nucleus	81.34	56.13
TraesCS6D01G403900.1	Wheat	plastid	75.93	55.92
TraesCS7B01G482100.1	Wheat	nucleus	74.0	55.72
TraesCS7D01G553000.1	Wheat	cytosol	73.87	55.67
TraesCS7A01G557400.1	Wheat	plastid	73.75	55.52
Zm00001d026111_P014	Maize	nucleus	77.86	55.25
EES18841	Sorghum	nucleus	78.76	55.18
TraesCS6B01G270900.1	Wheat	nucleus	76.83	55.02
TraesCS6A01G254600.2	Wheat	plastid	76.83	55.02
Zm00001d011096_P059	Maize	nucleus	77.73	54.51
HORVU7Hr1G120600.3	Barley	cytosol, nucleus	73.87	53.95
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	77.22	53.91
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	78.51	53.09
TraesCSU01G065300.1	Wheat	nucleus	80.57	52.52
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	80.57	51.74
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	80.57	51.74
Zm00001d014875_P001	Maize	nucleus	71.17	51.25
HORVU7Hr1G007000.14	Barley	nucleus	78.25	49.96
OQU86027	Sorghum	plastid	70.27	49.46
TraesCS2A01G258100.1	Wheat	mitochondrion	52.51	46.58
TraesCS1D01G151300.3	Wheat	plastid	50.06	45.82
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	49.68	45.47
TraesCS3B01G027100.1	Wheat	cytosol	8.88	45.1
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	48.78	44.54
Os02t0169400-01	Rice	nucleus	50.19	44.52
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	59.07	44.48
VIT_03s0038g00830.t01	Wine grape	nucleus	38.87	30.17
VIT_01s0113g00500.t01	Wine grape	nucleus	38.74	30.01
VIT_06s0009g01200.t01	Wine grape	nucleus	34.62	29.46
VIT_12s0059g01430.t01	Wine grape	nucleus	34.11	28.8
VIT_08s0040g00070.t01	Wine grape	nucleus	33.2	28.1
VIT_13s0175g00140.t01	Wine grape	nucleus	31.53	27.68
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	32.56	26.69
VIT_10s0042g01150.t01	Wine grape	nucleus	32.3	25.64
VIT_10s0042g01200.t01	Wine grape	nucleus	32.56	25.45
HORVU2Hr1G103840.1	Barley	cytosol	3.99	12.4

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	ProteinID:CCB46287	ProteinID:CCB46287.1	UniProt:F6H1Z1	EMBL:FN595229	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI00021097EB
ArrayExpress:VIT_19s0014g01840	EnsemblPlantsGene:VIT_19s0014g01840	EnsemblPlants:VIT_19s0014g01840.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:2025039..2028509

Molecular Weight (calculated)

87046.0 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.341

Length

777 amino acids

Sequence
(BLAST)

001: MGINAIRGGY TSNGAKQSVL QVVLAHRPPG DERLSKISKL AARADLHHLG LFLQGRQADA PQEALQVLDI VLRELPTTRY CPVGGSFYSP DLGRRQPLGE
101: GLESWRGFYQ SIRPTQMGLS LNIDMSSTAF IEPLPVIDFV TQLLNRDVSS RPLSDADRVK VKKALRGVKV EVTHRGNMRR KYRISGLTSQ ATRELTFPVD
201: DRGTVKSVFE YFYETYGFVI QHSQWPCLQV GNQQRPNYLP MEVCKIVEGQ RYSKRLNERQ ITALLKVTCQ RPQEREHDIM QTIHHNAYHE DPYAKEFGIK
301: ISEKLASVEA RILPAPWLKY HDTGREKDCL PQVGQWNMMN KKMVNGGTVN NWIGINFSRG VQESVARGFC QEFAQMCYIS GMAFNPEPVL PPITARPDQV
401: ERVLKARFHE AMTKLQPQGK ELDLLIVILP DNNGSLYGDL KRICETDLGL VSQCCLHKHV YRMSKQYLAN VALRINVKVG GRNTVLVDAI SRRIPLVSDR
501: PTIIFGADVT HPHPGEDSSP SIVAVVASQD WPEITKYAGL VCAQAHRQGL IQDLYKTWQD PVRGTVSGGM IKELLISFRR ATGQKPQRII FYRDGVSEGQ
601: FYQVLLYELD AIRKACASLE PNYQPPVTFV VVQKRHHTRL FANNHNDRNA VDKSGNILPG TPCWHSGHKL TCPLPRFTAD GLQSLTNNLC YTYARCTRSV
701: SIVPPAYYAH LAAFRARFYM EPETSDSGSM TSGAAAGRGG MGVGGPGPRN TRVSGANAAV RPLLALKENV KRVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.