Factsheet for GSMUA_Achr1P17950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13970_001	Banana	nucleus	86.16	85.75
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	59.43	80.69
GSMUA_AchrUn_...	Banana	mitochondrion	79.05	78.38
GSMUA_AchrUn_...	Banana	cytosol	14.41	77.55
GSMUA_Achr3P27070_001	Banana	nucleus	78.86	77.32
Solyc06g072300.2.1	Tomato	nucleus	77.06	77.13
GSMUA_Achr1P07120_001	Banana	cytosol	77.16	77.01
PGSC0003DMT400069313	Potato	cytosol	76.87	76.94
Solyc03g098280.2.1	Tomato	nucleus	71.47	76.94
VIT_17s0053g00680.t01	Wine grape	nucleus	78.39	76.22
CDY04311	Canola	cytosol, nucleus, plastid	69.67	75.0
AT1G48410.2	Thale cress	nucleus	73.55	73.9
CDY41831	Canola	nucleus	73.08	73.85
CDY68174	Canola	nucleus	73.36	73.57
GSMUA_Achr7P04100_001	Banana	extracellular	17.06	72.58
Bra014136.1-P	Field mustard	nucleus	73.65	72.01
GSMUA_Achr6P05310_001	Banana	nucleus	63.22	71.88
PGSC0003DMT400079716	Potato	nucleus	75.45	70.63
GSMUA_Achr4P30720_001	Banana	nucleus	62.27	70.42
Bra032254.1-P	Field mustard	nucleus	72.99	69.31
CDY23683	Canola	cytosol, nucleus, plastid	71.0	68.97
GSMUA_Achr7P13220_001	Banana	cytosol	61.23	68.29
GSMUA_AchrUn_...	Banana	cytosol	17.82	61.84
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	16.87	49.58
GSMUA_Achr6P04510_001	Banana	nucleus	52.13	44.46
GSMUA_Achr7P26400_001	Banana	cytosol	22.56	37.36
GSMUA_Achr9P22630_001	Banana	nucleus	30.24	35.6
GSMUA_Achr9P05150_001	Banana	nucleus	30.81	35.52
GSMUA_Achr9P27810_001	Banana	plastid	27.58	33.41

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	EnsemblPlantsGene:GSMUA_Achr1G17950_001
EnsemblPlants:GSMUA_Achr1P17950_001	EnsemblPlants:GSMUA_Achr1T17950_001	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M0S0V3
InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF12764
PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000294891A	SEG:seg	:

Description

Protein argonaute 1A [Source:GMGC_GENE;Acc:GSMUA_Achr1G17950_001]

Coordinates

chr1:-:13367712..13375758

Molecular Weight (calculated)

117809.0 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.440

Length

1055 amino acids

Sequence
(BLAST)

0001: MVRKHRTEGS AGESSESHET GGNSARAEPQ WPSDRGPAPQ QQGGAAGRGW APSSPQQTQQ GGRGGRRYYQ SRGGQPQPHD AQQPGAPSQY QGRGRHGSGP
0101: SAAGLSRPPA PELHQATQSP YQATQAAPLK PSSSRQPEFS ATEVAEQFQQ LSVHGEASSQ AIQPMPASSS KSMRFPVRPG KGTFGIKCVV KANHFVAELP
0201: DKDLHQYDVS IMPEATSRGV NRALMEHLVK LYREAYLGGR LPVYDGRKSL YTAGPLPFTS REFHISLDNE DDGSGMERRH RTFRVVIKLA ARVNLHRLEM
0301: FLAGRQADAP QEALQVLDIV LGELPTARYV PVGRSFYSPD IGTRKQLGEG LESWPGFYQS IRPTQMGLSL NIDFVVKQIY LLQVYISSTA FIEPLPVIDF
0401: VAQLLNRDVQ SRPLSDADRV KIKKALRGVK VEVTHRGNMR RKYRISGLTS QATRELTFHV DERGTMKSVV RYFQETYGFA IQHLSLPCLQ VGNQQRPNYL
0501: PMEVCKIVEG QRYSKRLNEK QITALLKVTC QLPRDRELDI IQTVHHNAYH EDPYAREFGI RISERLASVE ARVLPAPWLK YHDTGREKDC LPRVGQWNMM
0601: NKKLVNGGRV NNWTCISFAR NVQENVARGF CRELAQMCQI SGMEFALEPV LPPLSARPDH VERALKAHYH DAMNILQPRG KELDLLIVIL PDSNGSLYGD
0701: LKRICETDLG LVSQCCLTKH VFKISRQYLA NVALKINVKV GGRNTVLMDA LSRRIPFVSD QPTIIFGADV THPHPGEDSS PSIAAVVASQ DWPEVTKYAG
0801: LVCAQAHRQE LIQDLFKVWQ DPQRGTVTGG MIKELLISFK RATGQKPQRI IFYRDGVSEG QFYQVLLYEL DAIRKACASL ERNYQPPVTF VVVQKRHHTR
0901: LFANNHNDHR SVDKSGNILP GTVVDSMICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN NFTADALQTL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR
1001: ARFYMEPETS DSGSMTIGAT AGRGASASGL RTPVSAAVKP LPALKENIKR VMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.