Factsheet for GSMUA_Achr4P30720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05310_001	Banana	nucleus	91.21	91.7
TraesCS7D01G351700.1	Wheat	cytosol	83.07	81.41
TraesCS7B01G256500.1	Wheat	cytosol	82.96	80.96
TraesCS7A01G371200.2	Wheat	cytosol	82.96	80.46
GSMUA_Achr7P13220_001	Banana	cytosol	81.56	80.44
Zm00001d036917_P009	Maize	nucleus	83.07	80.23
Os06t0597400-01	Rice	cytosol	84.14	80.18
KXG20286	Sorghum	cytosol	84.14	80.02
Zm00001d046438_P003	Maize	cytosol	83.82	77.81
VIT_11s0016g04620.t01	Wine grape	cytosol	74.06	76.35
KRH63036	Soybean	cytosol	72.99	74.92
KRH54842	Soybean	nucleus	72.78	74.7
KRH03770	Soybean	nucleus	72.13	74.53
TraesCS6B01G206700.1	Wheat	plastid	75.67	74.47
TraesCS6D01G166300.1	Wheat	plastid	75.78	74.34
KRH56656	Soybean	cytosol	72.35	74.34
TraesCS6A01G178100.2	Wheat	plastid	75.24	74.05
HORVU6Hr1G036840.2	Barley	plastid	75.03	73.76
Solyc12g006790.1.1	Tomato	nucleus	73.1	73.1
PGSC0003DMT400053301	Potato	nucleus	71.38	72.39
GSMUA_AchrUn_...	Banana	cytosol	15.11	71.94
GSMUA_Achr7P04100_001	Banana	extracellular	18.11	68.15
GSMUA_Achr3P13970_001	Banana	nucleus	71.49	62.92
GSMUA_AchrUn_...	Banana	mitochondrion	71.17	62.41
GSMUA_Achr1P17950_001	Banana	nucleus	70.42	62.27
GSMUA_Achr3P27070_001	Banana	nucleus	70.31	60.97
GSMUA_Achr1P07120_001	Banana	cytosol	69.02	60.93
GSMUA_AchrUn_...	Banana	cytosol	18.33	56.25
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	18.22	47.35
GSMUA_Achr6P04510_001	Banana	nucleus	55.09	41.55
GSMUA_Achr7P26400_001	Banana	cytosol	25.51	37.36
GSMUA_Achr9P05150_001	Banana	nucleus	33.55	34.21
GSMUA_Achr9P22630_001	Banana	nucleus	32.05	33.37
GSMUA_Achr9P27810_001	Banana	plastid	30.98	33.18

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	EnsemblPlantsGene:GSMUA_Achr4G30720_001	EnsemblPlants:GSMUA_Achr4P30720_001
EnsemblPlants:GSMUA_Achr4T30720_001	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M0STI4	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF45	InterPro:Piwi
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690
SUPFAM:SSF53098	UniParc:UPI0002966E63	SEG:seg	:	:	:

Description

Protein argonaute PNH1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30720_001]

Coordinates

chr4:-:28191159..28198319

Molecular Weight (calculated)

105771.0 Da

IEP (calculated)

9.514

GRAVY (calculated)

-0.393

Length

933 amino acids

Sequence
(BLAST)

001: MPSRQMTKEL KGVKPIVSKK QSLNNSMNQQ KLENGCLPHD IKNVRRRRGR GRRKAVEREV KQEVEVGPET VAPPVSSKGV VFCRRPGFGQ AGTRCIVKAN
101: HFLAELPDKD LNQYDVTITP EVSSRSINRA IIAEFVRLYR ETDLGMRLPA YDGRKSLYTA GSLPFTSKEF TIKLLEEDGG ITREKEYRVG IKFVAHADLH
201: HLRQFIAGRQ TDAPRQALQV LDIVLRELSS QRYISVGRCF YSPDIRKPQR LGDGLQSWCG FYQSIRPTQM GLSLNIDMSC TAFIDPLPVV EFVAQILGKD
301: VSSRPLSDAD RIKIKKALRG VKVEITHRGN VRRKYRVSGL TAQPTRELIF PIDDQMNMKS VVEYFKEMYG FTIQYSHLPC LQVGNQKKAN YLPMEACKIV
401: EGQRYTKRLN EKQITSLLKV TCQRPREQEI DVLQTVRQNA YGHDPYAKEF GINISDKLTS VEARVLPAPW LKYHDTGKEK ECLPQVGQWN MMNKKVINGC
501: TVNYWACINF SRSVQENTAH SFCQELAQMC QVSGMEFNRE PVIPIYSARP DQVEKALRHV YNVATNKLKG KELELLVAIL PDNNGSLYGD LKRICETDLG
601: LISQCCLTKH VFKVSKQYLA NVSLKINVKM GGRNTVLLDA ISWRIPLVSD IPTIIFGADV THPETGEDSS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE
701: LIQDLFKTWH DPQRGTVTGG MIRELLISFR KATGQKPLRI IFYRDGVSEG QFYQVLLYEL DAIRKACASL EPNYQPPVTF VVVQKRHHTR LFANNHKDRS
801: STDKSGNILP GTVVDSKICH PSEFDFYLCS HAGIQGTSRP ARYHVLWDEN NFSADEMQTL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYMDPAVS
901: ENSTSRSVCQ GNDSPVKPLP ALKEKVKRVM FYC

Best Arabidopsis Sequence Match ( AT5G43810.3 )
(BLAST)

001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC

Arabidopsis Description

AGO10Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.