Factsheet for GSMUA_Achr6P05310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30720_001	Banana	nucleus	91.7	91.21
TraesCS7D01G351700.1	Wheat	cytosol	82.97	80.88
Os06t0597400-01	Rice	cytosol	85.13	80.69
Zm00001d036917_P009	Maize	nucleus	83.94	80.64
GSMUA_Achr7P13220_001	Banana	cytosol	82.11	80.55
TraesCS7B01G256500.1	Wheat	cytosol	82.87	80.44
TraesCS7A01G371200.2	Wheat	cytosol	83.08	80.15
KXG20286	Sorghum	cytosol	84.48	79.92
Zm00001d046438_P003	Maize	cytosol	84.16	77.71
VIT_11s0016g04620.t01	Wine grape	cytosol	74.25	76.13
KRH63036	Soybean	cytosol	73.38	74.92
KRH54842	Soybean	nucleus	73.06	74.59
KRH03770	Soybean	nucleus	72.41	74.42
KRH56656	Soybean	cytosol	72.52	74.12
TraesCS6D01G166300.1	Wheat	plastid	75.86	74.03
TraesCS6B01G206700.1	Wheat	plastid	75.54	73.95
GSMUA_AchrUn_...	Banana	cytosol	15.52	73.47
TraesCS6A01G178100.2	Wheat	plastid	75.0	73.42
Solyc12g006790.1.1	Tomato	nucleus	73.38	72.99
HORVU6Hr1G036840.2	Barley	plastid	74.57	72.92
PGSC0003DMT400053301	Potato	nucleus	71.66	72.28
GSMUA_Achr7P04100_001	Banana	extracellular	18.53	69.35
GSMUA_Achr3P13970_001	Banana	nucleus	72.31	63.3
GSMUA_Achr1P17950_001	Banana	nucleus	71.88	63.22
GSMUA_AchrUn_...	Banana	mitochondrion	72.31	63.06
GSMUA_Achr3P27070_001	Banana	nucleus	71.44	61.62
GSMUA_Achr1P07120_001	Banana	cytosol	69.83	61.31
GSMUA_AchrUn_...	Banana	cytosol	18.43	56.25
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	18.53	47.91
GSMUA_Achr6P04510_001	Banana	nucleus	54.53	40.91
GSMUA_Achr7P26400_001	Banana	cytosol	25.86	37.68
GSMUA_Achr9P22630_001	Banana	nucleus	32.54	33.71
GSMUA_Achr9P27810_001	Banana	plastid	31.25	33.3
GSMUA_Achr9P05150_001	Banana	nucleus	32.76	33.22

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	EnsemblPlantsGene:GSMUA_Achr6G05310_001	EnsemblPlants:GSMUA_Achr6P05310_001
EnsemblPlants:GSMUA_Achr6T05310_001	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M0T4C9	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF45	InterPro:Piwi
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690
SUPFAM:SSF53098	UniParc:UPI00029599E1	SEG:seg	:	:	:

Description

Protein argonaute PNH1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05310_001]

Coordinates

chr6:-:3572705..3579999

Molecular Weight (calculated)

104907.0 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.388

Length

928 amino acids

Sequence
(BLAST)

001: MPSRQMTSAL KGEKHIVSKK PLHNSVNQQK LDNGCQPQEA KSMGRRRGRA RGKAAGRQVK LEAEAGLEKG APPVSSKGIV FCRRPGFGQE GTRCIVKANH
101: FLAELPDKDL NQYDVTIIPE VSCRSMNRAI IAELVRLYRE TELGTRLPAY DGRKSLYTAG SLPFNSKEFI IRLVEDDDGM GEYRVGIKFV ARADLHHLRQ
201: FIAGQQTDAP REALQVLDIV LRELSNQRYI SVGRCFYSPD IRKPQRLGDG LQSWCGFYQS IRPTQMGLSL NIDPSSTAFI DPLPVIEFVA QVLGKDVLSR
301: PLSDADRIKI KKALRGVKVE VTHRGNVRRK YRVSGLTLQP THELIFPIDD QMNMKSVVEY FKEMYGFTIQ YAHLPCLQVG NQKKANYLPM EACKIVEGQR
401: YTKRLNEKQI TSLLKVTCQR PRDQEIDILQ TVRQNAYGHD PYAKEFGINI SEKLTSVEAR VLPAPWLKYN DTGKEKECLP QVGQWNMMNK KVINGCTVNY
501: WACINFSRSV QENTARSFCQ ELAQMCQVSG MEFDHEPVIP IYSARPDQVE KALRHVYNAA TNKLKGKELE LLIAILPDNN GSLYGDLKRI CETDLGLISQ
601: CCLTKHVFKI SKQYLANVSL KINVKMGGRN TVLLDAISWR IPLVSDIPTI IFGADVTHPE TGEDSSPSIA AVVASQDWPE VTKYAGLVCA QAHRQELIQD
701: LFKTWHDPQR GTVTGGMIRE LLISFRKATG QKPLRIIFYR DGVSEGQFYQ VLLYELDAIR KACASLEPNY QPPVTFVVVQ KRHHTRLFAN NHKDRSSTDK
801: SGNILPGTVV DTKICHPAEF DFYLCSHAGI QGTSRPAHYH VLWDENNFTA DEMQTLTNNL CYTYARCTRS VSIVPPAYYA HLAAFRARFY MDPEVSENPS
901: RSMHQTNGSS VKPLPALKDK VKRVMFYC

Best Arabidopsis Sequence Match ( AT5G43810.3 )
(BLAST)

001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC

Arabidopsis Description

AGO10Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.