Factsheet for GSMUA_Achr9P05150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05700_001
GSMUA_Achr7P16990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	GSMUA_Achr3P05700_001	AT2G40030.1	19410546
AT2G27040.1	GSMUA_Achr7P16990_001	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0151800-02	Rice	nucleus	74.64	74.97
VIT_06s0009g01200.t01	Wine grape	nucleus	73.99	74.15
Os01t0275600-01	Rice	nucleus	72.68	73.56
Zm00001d008249_P012	Maize	nucleus	72.13	73.33
PGSC0003DMT400070806	Potato	nucleus	23.39	73.29
Zm00001d040429_P012	Maize	nucleus	72.02	73.14
KRH14678	Soybean	nucleus	72.02	72.74
Solyc01g008960.2.1	Tomato	nucleus	72.24	72.72
PGSC0003DMT400058471	Potato	nucleus	72.24	72.72
OQU86696	Sorghum	nucleus	71.48	72.67
TraesCS3A01G188400.1	Wheat	nucleus	72.02	71.94
KRH73469	Soybean	nucleus	71.15	71.85
HORVU3Hr1G038830.1	Barley	nucleus	71.69	71.15
EES18816	Sorghum	nucleus	70.6	71.07
CDY72062	Canola	plastid	23.06	71.04
PGSC0003DMT400069459	Potato	nucleus	70.82	70.97
Solyc06g073540.2.1	Tomato	nucleus	70.71	70.87
Zm00001d039214_P025	Maize	nucleus	71.04	70.35
VIT_08s0040g00070.t01	Wine grape	nucleus	69.84	69.61
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	71.8	69.6
TraesCS1D01G453600.1	Wheat	nucleus	68.85	68.33
TraesCS1A01G445500.1	Wheat	golgi, unclear	69.07	68.32
TraesCS1B01G480100.1	Wheat	nucleus	68.85	67.96
KRG89867	Soybean	nucleus	69.84	67.48
Solyc01g096750.1.1	Tomato	nucleus	64.7	67.2
CDX77061	Canola	nucleus	67.21	66.7
Bra020152.1-P	Field mustard	nucleus	66.01	66.67
CDY48192	Canola	nucleus	67.1	66.59
TraesCS7A01G533100.1	Wheat	cytosol	65.57	66.59
CDY09103	Canola	nucleus	65.9	66.56
Bra034318.1-P	Field mustard	nucleus	66.99	66.49
TraesCS7D01G520400.1	Wheat	nucleus	66.01	66.45
CDY56413	Canola	nucleus	66.99	66.41
AT5G21150.1	Thale cress	nucleus	64.92	66.29
AT2G27040.1	Thale cress	nucleus	66.89	66.23
CDY04475	Canola	nucleus	66.78	66.2
Solyc06g073530.1.1	Tomato	nucleus	65.03	65.82
TraesCS7B01G450300.1	Wheat	nucleus	65.9	65.61
TraesCS3D01G191600.5	Wheat	nucleus	71.8	65.57
TraesCS7D01G458800.1	Wheat	nucleus	32.68	64.16
CDX92417	Canola	nucleus	45.14	64.13
Bra002361.1-P	Field mustard	nucleus	63.17	63.45
VIT_13s0175g00140.t01	Wine grape	nucleus	61.2	63.28
TraesCS7B01G450200.2	Wheat	nucleus	62.84	62.09
CDX92405	Canola	nucleus	62.08	62.08
GSMUA_Achr9P22630_001	Banana	nucleus	60.77	62.05
CDX92406	Canola	nucleus	60.77	61.5
CDY16587	Canola	nucleus	59.23	61.45
PGSC0003DMT400039204	Potato	cytosol	10.05	61.33
AT5G21030.2	Thale cress	cytosol	57.16	61.24
CDY59516	Canola	nucleus	60.55	61.15
Bra002360.1-P	Field mustard	nucleus	60.44	59.46
EES00570	Sorghum	nucleus	58.03	59.13
TraesCS7A01G521000.1	Wheat	nucleus	51.91	58.57
TraesCS7B01G437900.1	Wheat	cytosol	51.48	58.36
TraesCS7B01G437700.1	Wheat	nucleus	55.41	57.68
CDY16595	Canola	nucleus	56.07	55.76
Os01t0275200-00	Rice	golgi, peroxisome, plastid	28.2	55.25
KRH56276	Soybean	cytosol	49.95	54.99
GSMUA_Achr9P27810_001	Banana	plastid	51.37	53.96
TraesCS7B01G373400.1	Wheat	nucleus	45.46	52.93
TraesCS7D01G458900.1	Wheat	mitochondrion	10.27	51.65
Solyc03g111760.2.1	Tomato	mitochondrion	49.84	49.78
HORVU7Hr1G107770.1	Barley	nucleus	31.58	48.33
GSMUA_AchrUn_...	Banana	cytosol	9.51	44.39
CDY62055	Canola	nucleus	26.67	42.36
GSMUA_Achr7P04100_001	Banana	extracellular	10.49	38.71
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	14.54	37.05
GSMUA_Achr4P30720_001	Banana	nucleus	34.21	33.55
GSMUA_Achr7P13220_001	Banana	cytosol	33.99	32.88
GSMUA_Achr6P05310_001	Banana	nucleus	33.22	32.76
GSMUA_AchrUn_...	Banana	cytosol	10.82	32.57
GSMUA_Achr1P07120_001	Banana	cytosol	36.07	31.22
Bra002349.1-P	Field mustard	nucleus	57.92	31.16
GSMUA_Achr3P13970_001	Banana	nucleus	36.07	31.13
GSMUA_Achr3P27070_001	Banana	nucleus	36.28	30.86
GSMUA_Achr1P17950_001	Banana	nucleus	35.52	30.81
GSMUA_AchrUn_...	Banana	mitochondrion	35.52	30.55
GSMUA_Achr7P26400_001	Banana	cytosol	20.44	29.36
GSMUA_Achr6P04510_001	Banana	nucleus	34.97	25.87

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	EnsemblPlantsGene:GSMUA_Achr9G05150_001	EnsemblPlants:GSMUA_Achr9P05150_001
EnsemblPlants:GSMUA_Achr9T05150_001	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M0TXM4	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF56	InterPro:Piwi
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
UniParc:UPI000295CC9B	SEG:seg	:	:	:	:

Description

Protein argonaute 4B [Source:GMGC_GENE;Acc:GSMUA_Achr9G05150_001]

Coordinates

chr9:-:3336565..3342357

Molecular Weight (calculated)

102699.0 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.348

Length

915 amino acids

Sequence
(BLAST)

001: MESGFDSEAT EDLPPPPPIP PNVTPIKVDP EGSLPPKKAT KPSRVPMPRP GLGKKGQVVP LLTNHFKVSV RNVDDYFYHY SVLLKYEDDR PVDGKGIGRR
101: VIDKLHQTYD VDLGNKDFAY DGEKSLFTLG ALPHVKNEFT VVLEDVSSAR TTGNRSPHGN DSPGESDCKR VRRPYRIKTF KVELNFAAKI PMKSIAMALK
201: GYESENSQEA LRVLDIILRQ HAAKQGCLLV RQSFFQNNPR NFTDIGGGVL GCRGFHSSFR TSQGGLSLNI DVSTTMIVKP GPVVQFLIDN QNVKDPYHLD
301: WTKAKRVLKN LRIVTRHSNQ EFKIVGLSEL PCNELRFNFK QRNGRDGNGD SDTIEITVFD YFTKYRNIPL SFSATLPCIN VGKPKRPTYV PIELCSLVSL
401: QRYTKALSTF QRSSLVEKSR QKPQERMSVL TEALKFNNYD ADPMLRACGV TISAGFTQVE GRVLQPPKLR VGNGEDFMPS RGRWNFNHKK LVEPIEISRW
501: AVVTFSARCD IGSLIRDLIK CSNMKGIVMK EPFDVIEENP SVRRAPPVAR VDDMFQQIKK KLPGAPQFLL CLLPERKNSD IYGPWKRKCL AEFGIVTQCI
601: APTRVNDQYL TNVLLKINAK LGGINSFLNI ERSQAIPLVS NTPTIILGMD VSHGSPGQSD IPSIAAVVSS RQWPSISRYR ASVRSQSPKL EMIDSLFKPV
701: GDKNDEGIIR ELLIDFYTSS GKRKPENIII FRDGVSESQF VQVLNIELDQ IIEACKFLDE QWFPKFTLII AQKNHHTKFF QPKSPDNVQP GTVVDSKICH
801: PRNYDFYMCS HAGMIGTTRP THYHVLLDEI EFSADDLQEL VHSLSYVYQR STTAISVVAP ICYAHLAASQ LGQFVKFDDM SDSSSSHGGH TSAASVPVPE
901: LPRLHQNVSS SMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.