Factsheet for PGSC0003DMT400069459

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073540.2.1	Tomato	nucleus	98.69	98.69
PGSC0003DMT400058471	Potato	nucleus	86.53	86.91
Solyc06g073530.1.1	Tomato	nucleus	85.98	86.84
VIT_06s0009g01200.t01	Wine grape	nucleus	82.58	82.58
KRH73469	Soybean	nucleus	77.66	78.26
KRH14678	Soybean	nucleus	77.22	77.81
KRG89867	Soybean	nucleus	77.88	75.08
PGSC0003DMT400070806	Potato	nucleus	23.66	73.97
CDY48192	Canola	nucleus	73.93	73.21
Bra034318.1-P	Field mustard	nucleus	73.82	73.1
CDX77061	Canola	nucleus	73.71	72.99
CDY04475	Canola	nucleus	73.17	72.37
AT2G27040.1	Thale cress	nucleus	73.17	72.29
CDY56413	Canola	nucleus	73.06	72.26
Os04t0151800-02	Rice	nucleus	71.41	71.57
Os01t0275600-01	Rice	nucleus	70.65	71.35
GSMUA_Achr9P05150_001	Banana	nucleus	70.97	70.82
Zm00001d040429_P012	Maize	nucleus	69.44	70.37
Zm00001d008249_P012	Maize	nucleus	69.11	70.11
OQU86696	Sorghum	nucleus	69.11	70.11
EES18816	Sorghum	nucleus	68.78	69.09
TraesCS3A01G188400.1	Wheat	nucleus	68.35	68.12
Zm00001d039214_P025	Maize	nucleus	68.24	67.42
HORVU3Hr1G038830.1	Barley	nucleus	68.02	67.35
TraesCS1D01G453600.1	Wheat	nucleus	67.91	67.25
TraesCS1A01G445500.1	Wheat	golgi, unclear	68.13	67.24
TraesCS1B01G480100.1	Wheat	nucleus	68.13	67.1
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	68.24	66.0
TraesCS7A01G533100.1	Wheat	cytosol	64.18	65.04
TraesCS7D01G520400.1	Wheat	nucleus	63.09	63.37
TraesCS7B01G450300.1	Wheat	nucleus	63.2	62.79
TraesCS3D01G191600.5	Wheat	nucleus	68.35	62.28
TraesCS7D01G458800.1	Wheat	nucleus	31.76	62.23
TraesCS7B01G450200.2	Wheat	nucleus	61.88	61.02
PGSC0003DMT400039204	Potato	cytosol	9.97	60.67
TraesCS7A01G521000.1	Wheat	nucleus	52.25	58.82
TraesCS7B01G437900.1	Wheat	cytosol	50.93	57.62
EES00570	Sorghum	nucleus	56.63	57.57
TraesCS7B01G437700.1	Wheat	nucleus	54.22	56.31
Os01t0275200-00	Rice	golgi, peroxisome, plastid	27.71	54.18
TraesCS7B01G373400.1	Wheat	nucleus	45.67	53.05
TraesCS7D01G458900.1	Wheat	mitochondrion	9.97	50.0
HORVU7Hr1G107770.1	Barley	nucleus	31.54	48.16
CDY62055	Canola	nucleus	30.23	47.92
PGSC0003DMT400077569	Potato	nucleus, plastid	34.61	32.95
PGSC0003DMT400053301	Potato	nucleus	31.33	31.09
PGSC0003DMT400069313	Potato	cytosol	35.82	31.02
PGSC0003DMT400054667	Potato	cytosol	24.53	30.68
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	33.95	30.24
PGSC0003DMT400079716	Potato	nucleus	34.5	27.95
PGSC0003DMT400062439	Potato	nucleus	29.35	26.75
PGSC0003DMT400054669	Potato	cytosol	28.92	25.12
PGSC0003DMT400054661	Potato	nucleus	25.19	23.47

Protein Annotations

EntrezGene:102589875	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M1CKG8	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
EnsemblPlantsGene:PGSC0003DMG400027002	PGSC:PGSC0003DMG400027002	EnsemblPlants:PGSC0003DMT400069459	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000295B23E	RefSeq:XP_006347268.1	RefSeq:XP_006347269.1	RefSeq:XP_015164242.1
SEG:seg	:	:	:	:	:

Description

AGO4-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027002]

Coordinates

chr6:+:54039209..54048244

Molecular Weight (calculated)

101944.0 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.405

Length

913 amino acids

Sequence
(BLAST)

001: MAEEENGGST EALPPPPPVP LDFSPAQAEP EPVKKKVLRV PMARRGLGSK GQKIPILTNH FKVNVSNVDG HFFHYSVALF YEDGRPVEGK GIGRKVLDRV
101: HETYDTELAG KDFAYDGEKS LFTIGSLPRN KLEFTVVLDD ITSNRNNGTN GNSSPGRHGS PPNETDRKRL RRPYQSKTYK VEISFAAKIP MQAIANALRG
201: QESENSQEAL RVLDIILRQH AAKQGCLLVR QSFFHNDPKN FADVGGGVLG CRGFHSSFRT TQSGLSLNID VSTTMIIQPG PVVDFLIANQ NAKDPFSLDW
301: AKAKRVLKNL RVKTAPANQE FKITGLSEKP CREQTFTLKQ RSKDEDGEVQ TSEVTVYDYF VNHRNIDLRY SADLPCLNVG KPKRPTYFPI ELCTLVSLQR
401: YTKALSTFQR ASLVEKSRQK PQERMEILSN ALKINNYDAE PLLRSCGVSI SSNFTQVEGR VLPAPKLKAG NGDDLFTRNG RWNFNNKRFF DPAKVERWAV
501: VNFSARCDLR GLVRDLTRLG ETKGISVEAP FEVFEESPQL RRAPPVVRVD KMFEEIQSKL PGAPKFLLCL LPERKNCDIY GPWKRKNLAD HGIVTQCLAP
601: GRVNDQYLTN LLLKINAKLG GLNSMLAAEV SPSIPMVSKV PTMILGMDVS HGSPGQSDVP SIAAVVSSRQ WPSISRYRAS VRTQSPKVEM IDNIFKKISD
701: TEDDGIMREL LLDFYVSSGK RKPEHIIVFR DGVSESQFNQ VLNIELDQLI EACKFLDEKW SPKFVIIVAQ KNHHTKFFQS GSPDNVPPGT IIDNKVCHPR
801: NNDFYLCAHA GMIGTTRPTH YHVLLDEVGF SPDELQELVH NLSYVYQRST TAISIVAPIS YAHLAATQVG QWMKFEDASE TSSSHGGLTN AGPVTVPQLP
901: RLQENVASSM FFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.