Factsheet for PGSC0003DMT400018363

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074730.2.1	Tomato	nucleus	84.88	86.05
Zm00001d015926_P001	Maize	nucleus	15.02	68.44
TraesCS4B01G026600.1	Wheat	cytosol	29.56	62.47
Zm00001d018436_P001	Maize	cytosol	7.41	62.3
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.27	58.87
TraesCS5A01G446000.1	Wheat	cytosol	48.68	58.77
EER90726	Sorghum	cytosol	48.2	58.19
TraesCS4D01G024300.1	Wheat	cytosol	31.22	58.18
TraesCS4D01G024100.1	Wheat	plastid	48.49	57.99
TraesCS4A01G288300.1	Wheat	plastid	48.29	57.76
TraesCS5B01G468000.1	Wheat	plastid	48.2	56.59
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	56.49	56.1
OQU91198	Sorghum	nucleus	40.59	55.99
OQU88608	Sorghum	plastid	47.9	55.73
TraesCS5D01G454600.1	Wheat	cytosol	39.9	55.2
HORVU2Hr1G031130.2	Barley	cytosol, nucleus	45.37	55.16
TraesCS4A01G288000.1	Wheat	cytosol	38.54	55.09
OQU91197	Sorghum	plastid	47.51	55.09
CDX71410	Canola	nucleus	50.93	54.83
KRH25139	Soybean	plastid	51.32	54.73
Zm00001d032611_P002	Maize	vacuole	19.8	54.57
TraesCS5B01G454200.1	Wheat	cytosol	35.61	54.07
KRH30536	Soybean	plastid	46.93	54.04
CDY04517	Canola	plastid	50.44	54.02
Bra011993.1-P	Field mustard	plastid	50.44	53.52
PGSC0003DMT400077569	Potato	nucleus, plastid	49.66	53.08
TraesCS3B01G287600.1	Wheat	nucleus	46.83	52.98
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	43.9	52.88
Os03t0682600-00	Rice	nucleus	38.34	52.61
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	50.83	52.26
Zm00001d036886_P001	Maize	plastid	11.41	51.77
PGSC0003DMT400069313	Potato	cytosol	53.17	51.71
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	23.02	51.64
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	10.24	51.47
Zm00001d025691_P001	Maize	mitochondrion	9.76	51.28
TraesCS5B01G452500.1	Wheat	nucleus	45.46	51.1
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	52.2	50.81
TraesCS5B01G451400.2	Wheat	plastid	52.39	50.66
Os03t0800200-01	Rice	plasma membrane	51.9	50.28
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	48.2	50.15
PGSC0003DMT400053301	Potato	nucleus	44.39	49.46
Zm00001d009158_P003	Maize	golgi	21.07	49.43
TraesCS2B01G195200.2	Wheat	nucleus	48.2	49.01
TraesCS2A01G168900.1	Wheat	cytosol	49.37	48.79
TraesCS4B01G024000.1	Wheat	nucleus	48.68	48.73
TraesCS2D01G176500.1	Wheat	golgi, unclear	49.17	48.6
Os07t0188000-01	Rice	nucleus	49.66	48.38
Zm00001d013063_P001	Maize	nucleus	47.51	48.22
PGSC0003DMT400079716	Potato	nucleus	52.98	48.18
HORVU4Hr1G004030.1	Barley	mitochondrion	48.39	48.02
Zm00001d013542_P003	Maize	nucleus	48.98	47.58
Zm00001d007786_P001	Maize	nucleus	47.71	47.38
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	16.2	46.24
PGSC0003DMT400039204	Potato	cytosol	6.63	45.33
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.83	44.4
PGSC0003DMT400070806	Potato	nucleus	12.59	44.18
Zm00001d033518_P001	Maize	nucleus	50.83	43.89
TraesCS7A01G067500.2	Wheat	cytosol	35.12	42.15
GSMUA_Achr6P04510_001	Banana	nucleus	50.24	41.63
TraesCS5B01G458100.1	Wheat	cytosol	36.98	39.89
PGSC0003DMT400058471	Potato	nucleus	30.63	34.54
Zm00001d039440_P001	Maize	cytosol	8.2	34.43
PGSC0003DMT400069459	Potato	nucleus	30.24	33.95
Os02t0616300-00	Rice	vacuole	10.93	33.84
PGSC0003DMT400062439	Potato	nucleus	32.98	33.73
TraesCS5D01G192700.2	Wheat	nucleus	30.73	33.4
PGSC0003DMT400054667	Potato	cytosol	23.32	32.74
PGSC0003DMT400054669	Potato	cytosol	30.24	29.5
EER93271	Sorghum	cytosol	28.88	29.25
Zm00001d035554_P001	Maize	plastid	13.85	28.23
PGSC0003DMT400054661	Potato	nucleus	25.37	26.53
Os03t0789500-01	Rice	cytosol	0.39	1.76

Protein Annotations

EntrezGene:102594657	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009615	GO:GO:0009814	GO:GO:0009987	GO:GO:0031047	GO:GO:0040029	GO:GO:0060145
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M1AAH6	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
EnsemblPlantsGene:PGSC0003DMG400007129	PGSC:PGSC0003DMG400007129	EnsemblPlants:PGSC0003DMT400018363	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0002962F93	RefSeq:XP_006347212.1	SEG:seg

Description

Eukaryotic translation initiation factor 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400007129]

Coordinates

chr6:+:55271437..55278238

Molecular Weight (calculated)

114260.0 Da

IEP (calculated)

9.649

GRAVY (calculated)

-0.484

Length

1025 amino acids

Sequence
(BLAST)

0001: MSERGRGRRG GSPYGGGRGG GRTPPYGGGR GDGRTPPYGG GRGGGRTPPS DGRGRGYPSP GGRGRGTYSS GGSSSYSASP SYNAPPSYNP PPIYHHQQPS
0101: MAVSSMTREV EQKLSLQPST SANPPAGPQP VQQSSPPVAT IPAHLAGPST STQPPRPPPV SSKNMRPPPR PDYGTIGRRC LVKANHFLVQ VADRDVHHYD
0201: VTITPEVLSK KVCRLIIKQL VESYKLSHLG GRRLAYDGRK SAYTAGALPF ASKEFVIMFA DDNGGARRER EFKVSIKFAA KADIHHLKQF LRSRQSDVPQ
0301: ETIQALDVVL RTNPSVKYEV VGRSLFHNES EDDTGSLTGG LEFWRGYYQS LRPTQMGLAL NIDMSARAFY EPIFVSDYVL RHLNLRDDPQ VRLSDQDHSK
0401: VRKVLKGVKV EATHQGRRYR ITGLTPRPST TMMFPVDGTE TMVSVAAYFQ QKYSIVLTYP MLPALQCGSN AKAVYLPMEI CKIVSGQRYT KMLNGRQVTE
0501: MLRATCQRPK EREGGIREIV KTNNYADDKL VHEFGIGVDT PLTTIEARVL KAPMLMYHES GKESRVDPRV GQWNMIDKKL INAAHVNCWT CVSFSPRVPP
0601: ERLVDRLLHM CISKGMSFES PLVPLRRAHP EQIEKTLRDI HRESMQAIDK KKGEQEIKHL QLLIVVLPDG SGQYGMIKRL CEIDLGIVSQ CCHPKNLQPP
0701: SNPYLENLTL KINVKVGGRN SVLELAVTKR MPFITDTPTI VFGADVTHPQ PGEDSSPSIA AVVASMDWPE VTKYRGIVSA QPHRQEIIMD LYTEKEDPKK
0801: GIVRGGMIMD LLKAFYKVTK RKPYRIIFYR DGVSEGQFNQ VLLEEMDAIR KACAALENNY MPPVTFVVVQ KRHHTRLFPS NHDDRSLIDR SGNILPGTVV
0901: DTRICHPTEF DFYLCSHAGI KGTSRPVHYH VLYDENNFTA DAIQNVTNHL CYTYVRCTRS VSLVPPAYYA HLAAFRARYY MENDVDVRAA NEGGEGGAAT
1001: REQAAAQFRP LPNIHENVSE VMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.