Factsheet for TraesCS4D01G024300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G288000.1	Wheat	cytosol	92.91	71.27
TraesCS7D01G552900.1	Wheat	mitochondrion	48.91	59.12
OQU91198	Sorghum	nucleus	79.27	58.68
TraesCS7D01G553200.1	Wheat	nucleus, plastid	49.64	56.99
TraesCS4B01G024000.1	Wheat	nucleus	98.36	52.83
Os03t0682600-00	Rice	nucleus	71.27	52.48
HORVU4Hr1G004030.1	Barley	mitochondrion	93.82	49.95
TraesCS4D01G024100.1	Wheat	plastid	72.91	46.79
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	28.36	43.45
TraesCS5D01G454600.1	Wheat	cytosol	55.45	41.16
Zm00001d013542_P003	Maize	nucleus	78.18	40.76
TraesCS7D01G458800.1	Wheat	nucleus	32.55	38.41
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.55	36.05
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	54.36	35.14
CDX71410	Canola	nucleus	59.27	34.24
TraesCS7D01G351700.1	Wheat	cytosol	58.73	33.93
CDY04517	Canola	plastid	58.91	33.86
KRH25139	Soybean	plastid	59.09	33.82
Bra011993.1-P	Field mustard	plastid	59.09	33.64
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	62.55	33.33
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	62.36	32.57
TraesCS6D01G166300.1	Wheat	plastid	55.82	32.28
TraesCS7D01G553000.1	Wheat	cytosol	59.64	31.81
TraesCS2D01G176500.1	Wheat	golgi, unclear	59.82	31.73
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	56.91	31.39
KRH30536	Soybean	plastid	50.55	31.24
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	58.18	31.22
TraesCS1D01G151300.3	Wheat	plastid	48.18	31.21
TraesCS6D01G403900.1	Wheat	plastid	59.82	31.18
TraesCS2D01G400200.1	Wheat	nucleus	61.64	30.85
Solyc06g074730.2.1	Tomato	nucleus	56.18	30.56
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	46.36	30.36
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	60.55	29.92
GSMUA_Achr6P04510_001	Banana	nucleus	64.0	28.46
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	62.0	28.18
TraesCS5D01G169500.1	Wheat	cytosol	37.64	23.47
TraesCS1D01G453600.1	Wheat	nucleus	36.91	22.02
TraesCS7D01G520400.1	Wheat	nucleus	35.27	21.34
TraesCS2D01G412100.1	Wheat	plastid	41.09	20.23
TraesCS3D01G191600.5	Wheat	nucleus	36.73	20.16
TraesCS2D01G417000.1	Wheat	nucleus	36.73	19.27
TraesCS5D01G192700.2	Wheat	nucleus	32.0	18.66
TraesCS2D01G416500.1	Wheat	nucleus	32.91	17.12
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom_sf
PFAM:PF02171	PFAM:PF16487	PFAM:PF16488	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SUPFAM:SSF101690	SUPFAM:SSF53098
EnsemblPlantsGene:TraesCS4D01G024300	EnsemblPlants:TraesCS4D01G024300.1	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:10746363..10750251

Molecular Weight (calculated)

61712.1 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.268

Length

550 amino acids

Sequence
(BLAST)

001: MEVCNILGGQ RYSRKLNERQ VTNILRLACE RPDKREGSIV EVINRNNYGI DDNAKEFGIK VMNQLALVDA RVLPPPRLKY HQSGREQICN PSVGQWNMNN
101: KRMINGGSIR HWACVSFGSR LQWNDVSVFC DHLVGTCNNM GMQVSETPCV DIVQACQGNL EAVKNIYRQS AQVLAQQGLE GENLELLFVV LPDGPNASDC
201: YGRVKRLCEI ELGLITQCCL PKHVQRAGTQ YLQNMALKIN VKVGGRNTVL ENALLRRIPL LTDKPTIIFG ADVTHPSPGE DVSPSIAAVV ASMDWPEVSK
301: YTCLVSSQGH REEIIADLFT EVKDPQKGVI YGGMIRELLL SFYKANKSCK PGRIIFYRDG VSEGQFSQVL LYEMDVIYRA CSSLENGYLP QVTFVVVQKR
401: HHTRLFPEDH RSGAMADRSG NILPGTVVDT KICHPSEFDF YLCSHAGIQG TSRPTHYHVL FDDNNFTADA LQTLTYNLCY TYARCTRSVS IVPPAYYAHL
501: AAFRARHYLD DNHSDQGSSS VGGTRRFDQA VPVKPLPKVK ESVRQFMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.