Factsheet for Solyc06g074730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	86.05	84.88
Zm00001d015926_P001	Maize	nucleus	15.23	68.44
TraesCS4B01G026600.1	Wheat	cytosol	29.67	61.86
Zm00001d018436_P001	Maize	cytosol	7.42	61.48
TraesCS5A01G446000.1	Wheat	cytosol	48.57	57.83
EER90726	Sorghum	cytosol	48.47	57.72
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.16	57.58
TraesCS4A01G288300.1	Wheat	plastid	47.87	56.48
TraesCS4D01G024100.1	Wheat	plastid	47.77	56.36
TraesCS4D01G024300.1	Wheat	cytosol	30.56	56.18
TraesCS5B01G468000.1	Wheat	plastid	47.68	55.21
CDX71410	Canola	nucleus	51.53	54.73
HORVU2Hr1G031130.2	Barley	cytosol, nucleus	45.6	54.69
OQU88608	Sorghum	plastid	47.38	54.37
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.49	54.36
OQU91198	Sorghum	nucleus	39.86	54.24
CDY04517	Canola	plastid	51.14	54.02
TraesCS4A01G288000.1	Wheat	cytosol	38.28	53.97
Zm00001d032611_P002	Maize	vacuole	19.78	53.76
TraesCS5D01G454600.1	Wheat	cytosol	39.37	53.71
KRH25139	Soybean	plastid	50.94	53.59
OQU91197	Sorghum	plastid	46.79	53.51
Bra011993.1-P	Field mustard	plastid	51.04	53.42
KRH30536	Soybean	plastid	46.59	52.92
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	51.73	52.46
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	44.02	52.29
TraesCS3B01G287600.1	Wheat	nucleus	46.79	52.21
TraesCS5B01G454200.1	Wheat	cytosol	34.82	52.15
Os03t0682600-00	Rice	nucleus	37.98	51.41
Zm00001d036886_P001	Maize	plastid	11.47	51.33
Solyc03g098280.2.1	Tomato	nucleus	49.75	51.33
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	10.29	50.98
Solyc06g072300.2.1	Tomato	nucleus	53.02	50.85
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	22.85	50.55
Solyc09g082830.2.1	Tomato	nucleus	48.86	50.31
TraesCS5B01G452500.1	Wheat	nucleus	45.1	50.0
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	51.83	49.76
TraesCS5B01G451400.2	Wheat	plastid	52.03	49.62
Os03t0800200-01	Rice	plasma membrane	51.63	49.34
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	47.87	49.14
Zm00001d009158_P003	Maize	golgi	21.17	48.97
TraesCS2B01G195200.2	Wheat	nucleus	48.66	48.81
TraesCS2A01G168900.1	Wheat	cytosol	49.65	48.41
Solyc12g006790.1.1	Tomato	nucleus	44.51	48.23
Zm00001d025691_P001	Maize	mitochondrion	9.3	48.21
TraesCS2D01G176500.1	Wheat	golgi, unclear	49.36	48.12
Os07t0188000-01	Rice	nucleus	49.95	48.0
TraesCS4B01G024000.1	Wheat	nucleus	48.07	47.46
Zm00001d013063_P001	Maize	nucleus	47.38	47.43
Zm00001d013542_P003	Maize	nucleus	48.86	46.82
Zm00001d007786_P001	Maize	nucleus	47.77	46.8
HORVU4Hr1G004030.1	Barley	mitochondrion	47.77	46.76
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	16.12	45.4
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.55	43.26
Zm00001d033518_P001	Maize	nucleus	49.75	42.38
GSMUA_Achr6P04510_001	Banana	nucleus	50.84	41.55
TraesCS7A01G067500.2	Wheat	cytosol	34.92	41.33
TraesCS5B01G458100.1	Wheat	cytosol	36.4	38.74
Solyc01g008960.2.1	Tomato	nucleus	30.17	33.55
Solyc01g010970.2.1	Tomato	nucleus	33.14	33.5
Solyc01g096750.1.1	Tomato	nucleus	29.18	33.48
Solyc07g049500.2.1	Tomato	nucleus	29.67	33.22
Zm00001d039440_P001	Maize	cytosol	7.91	32.79
Solyc06g073540.2.1	Tomato	nucleus	29.57	32.75
Solyc06g073530.1.1	Tomato	nucleus	29.18	32.63
TraesCS5D01G192700.2	Wheat	nucleus	30.37	32.56
Os02t0616300-00	Rice	vacuole	10.29	31.42
EER93271	Sorghum	cytosol	29.18	29.15
Zm00001d035554_P001	Maize	plastid	14.24	28.63
Solyc02g069270.2.1	Tomato	cytosol	27.2	28.15
Solyc03g111760.2.1	Tomato	mitochondrion	25.22	27.84
Solyc02g069260.2.1	Tomato	nucleus	28.68	27.83
Solyc02g069280.2.1	Tomato	nucleus	26.61	26.93
Os03t0789500-01	Rice	cytosol	0.4	1.76

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009814	GO:GO:0009987
GO:GO:0031047	GO:GO:0040029	GO:GO:0060145	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
EMBL:JX467712	UniProt:K4C9J1	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g074730.2	EnsemblPlants:Solyc06g074730.2.1	UniParc:UPI0002766790
SEG:seg	:	:	:	:	:

Description

AGO5 [Source:UniProtKB/TrEMBL;Acc:K4C9J1]

Coordinates

chr6:+:46271455..46278053

Molecular Weight (calculated)

112648.0 Da

IEP (calculated)

9.674

GRAVY (calculated)

-0.465

Length

1011 amino acids

Sequence
(BLAST)

0001: MSERGRGRRG GSPYGGGRGG GRTPPYGGGR GDGRTPPYGG GRGGGRTSPS DGRGRGYQSP GGRGRGTYSS GGSPSYNAPP MYHHQQQSME VSSMTREVEQ
0101: KLSLQPSTSA NPPARPQPAQ QSSPPVQPPV ATIPAHLAGP STSTQPPRPP PVSSKSIRPP PRPDNGKLGR KCVVRANHFL VQVADRDVHH YDVTISPEVL
0201: SKKVCRLIIQ QLVNNYRLSH LGGRGLAYDG RKSAYTAGAL PFTSKEFVII FADDNGGPRR EKEFKVSIKF AAKADIHHLK QFLQSRQSDV PQETIQALDV
0301: VLRTNPSAKY EVVGRSLFHH TFAGDAGLLT GGLEYWRGYY QSLRPTQMGL ALNIDMSARA FYESVFVSDY VLRHLNLRDH PQVSLSDQDH SKVRKVLKGV
0401: KVEATHQGRH YRITGLTPKS SSQMMFPVDG TDGMISVEQY FNTKYEIVLA YPRLPAIQCG NSAKPVYLPM EICKIVPGQR YTKMLNGRQV TEMLRATCQR
0501: PKERLNGIQN IVRVNKYADD DLVHEFGIGV DARLTTIEAR VLNPPTLRFH ASGKESRVDP RVGQWNMIDK KMINPAHVYY WTCVSFSQQI PPDRLVDGLH
0601: RMCISKGMTF DAPLVPFRQA RPDHIETTLR DIHRESMQAI DRLGEDLKIK HLQLLLVILP DGTGQYGRIK RLCEIDLGIV SQCCHPKNLR PPSIAFLENL
0701: SLKINVKVGG RNSVLELAVS KNMPFLTDKT TIVFGADVTH PQPGEDSSPS IAAVVASMDW PEVTKYRGIV SAQPHRQEII MDLYTEKEDS KRGVVRGGMI
0801: MDLLKAFYAA TKIKPDRIIF YRDGVSEGQF NQVLLEEMDA IRKACVALQS DYMPRVTFVV VQKRHHTRLF PSNHDDRTLT DRSGNILPGT VVDTNICHPT
0901: EFDFYLCSHA GIKGTSRPAH YHVLYDENNF TADGIQNVTN YLCYTYVRCT RSVSLVPPAY YAHLAAFRAR YYMENDVDVR AANEGGEGGA AAQFRQLPKI
1001: HENVSEVMFY C

Best Arabidopsis Sequence Match ( AT2G27880.1 )
(BLAST)

001: MSNRGGGGHG GASRGRGGGR RSDQRQDQSS GQVAWPGLQQ SYGGRGGSVS AGRGRGNVGR GENTGDLTAT QVPVASAVSG GRGRGNIGDP TFSVASSSKT
101: VSVASSSKEE SKNTEVSETM SNLQITSTET KPEMTSLPPA SSKAVTFPVR PGRGTLGKKV MVRANHFLVQ VADRDLYHYD VSINPEVISK TVNRNVMKLL
201: VKNYKDSHLG GKSPAYDGRK SLYTAGPLPF DSKEFVVNLA EKRADGSSGK DRPFKVAVKN VTSTDLYQLQ QFLDRKQREA PYDTIQVLDV VLRDKPSNDY
301: VSVGRSFFHT SLGKDARDGR GELGDGIEYW RGYFQSLRLT QMGLSLNIDV SARSFYEPIV VTDFISKFLN IRDLNRPLRD SDRLKVKKVL RTLKVKLLHW
401: NGTKSAKISG ISSLPIRELR FTLEDKSEKT VVQYFAEKYN YRVKYQALPA IQTGSDTRPV YLPMELCQID EGQRYTKRLN EKQVTALLKA TCQRPPDREN
501: SIKNLVVKNN YNDDLSKEFG MSVTTQLASI EARVLPPPML KYHDSGKEKM VNPRLGQWNM IDKKMVNGAK VTSWTCVSFS TRIDRGLPQE FCKQLIGMCV
601: SKGMEFKPQP AIPFISCPPE HIEEALLDIH KRAPGLQLLI VILPDVTGSY GKIKRICETE LGIVSQCCQP RQVNKLNKQY MENVALKINV KTGGRNTVLN
701: DAIRRNIPLI TDRPTIIMGA DVTHPQPGED SSPSIAAVVA SMDWPEINKY RGLVSAQAHR EEIIQDLYKL VQDPQRGLVH SGLIREHFIA FRRATGQIPQ
801: RIIFYRDGVS EGQFSQVLLH EMTAIRKACN SLQENYVPRV TFVIVQKRHH TRLFPEQHGN RDMTDKSGNI QPGTVVDTKI CHPNEFDFYL NSHAGIQGTS
901: RPAHYHVLLD ENGFTADQLQ MLTNNLCYTY ARCTKSVSIV PPAYYAHLAA FRARYYMESE MSDGGSSRSR SSTTGVGQVI SQLPAIKDNV KEVMFYC

Arabidopsis Description

AGO5Protein argonaute 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.