Factsheet for TraesCS5B01G452500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G454600.1	Wheat	cytosol	77.19	95.01
TraesCS5B01G454200.1	Wheat	cytosol	68.86	93.04
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	42.11	84.03
TraesCS3B01G287600.1	Wheat	nucleus	80.92	81.46
EER90726	Sorghum	cytosol	75.77	81.39
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	79.28	73.4
TraesCS5B01G451400.2	Wheat	plastid	84.54	72.74
Os03t0800200-01	Rice	plasma membrane	78.07	67.3
Zm00001d032611_P002	Maize	vacuole	27.3	66.94
TraesCS5B01G458100.1	Wheat	cytosol	69.41	66.63
Zm00001d009158_P003	Maize	golgi	30.15	62.93
Zm00001d013063_P001	Maize	nucleus	68.75	62.08
TraesCS4B01G026600.1	Wheat	cytosol	30.59	57.53
TraesCS5B01G468000.1	Wheat	plastid	54.82	57.27
TraesCS3B01G027100.1	Wheat	cytosol	8.88	52.94
TraesCS2B01G195200.2	Wheat	nucleus	56.91	51.49
CDX71410	Canola	nucleus	53.29	51.05
CDY04517	Canola	plastid	53.18	50.68
Bra011993.1-P	Field mustard	plastid	53.29	50.31
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	46.49	49.82
KRH30536	Soybean	plastid	48.57	49.78
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.26	48.84
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	53.18	48.65
KRH25139	Soybean	plastid	51.21	48.6
TraesCS7B01G256500.1	Wheat	cytosol	50.44	48.12
Zm00001d036886_P001	Maize	plastid	11.62	46.9
TraesCS4B01G024000.1	Wheat	nucleus	52.41	46.68
TraesCS6B01G466700.1	Wheat	nucleus	50.88	45.8
TraesCS6B01G206700.1	Wheat	plastid	47.59	45.78
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	51.1	45.46
Solyc06g074730.2.1	Tomato	nucleus	50.0	45.1
TraesCS3B01G135800.1	Wheat	cytosol	41.23	44.71
TraesCS7B01G482100.1	Wheat	nucleus	50.22	44.38
TraesCS2B01G421000.2	Wheat	nucleus	52.52	43.47
TraesCS6B01G270900.1	Wheat	nucleus	50.99	42.86
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	38.93	41.81
TraesCS7B01G437900.1	Wheat	cytosol	28.62	32.34
Zm00001d039440_P001	Maize	cytosol	8.55	31.97
TraesCS7B01G437700.1	Wheat	nucleus	30.04	31.17
TraesCS5B01G162300.1	Wheat	mitochondrion	30.37	30.85
TraesCS1B01G480100.1	Wheat	nucleus	30.15	29.67
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	30.37	29.34
TraesCS7B01G450300.1	Wheat	nucleus	29.17	28.94
TraesCS7B01G373400.1	Wheat	nucleus	24.89	28.88
TraesCS7B01G450200.2	Wheat	nucleus	27.52	27.11
TraesCS2B01G434000.1	Wheat	nucleus	30.48	26.48
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	23.14	26.28
TraesCS2B01G439000.2	Wheat	nucleus, unclear	28.73	25.05
Zm00001d035554_P001	Maize	plastid	13.6	24.65
TraesCS2B01G438200.1	Wheat	nucleus	25.0	21.33
Os03t0789500-01	Rice	cytosol	1.54	6.17

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5B01G452500
EnsemblPlants:TraesCS5B01G452500.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:625223444..625232360

Molecular Weight (calculated)

103655.0 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.430

Length

912 amino acids

Sequence
(BLAST)

001: MIRANHFLVN VADNNLFHYD VSINPESKSR AVNREVLSEL IKLHGKTSLG GKLPAYDGRK SLYTAGSLPF ESEEFSVTLV DPEKKDKEKA EREYKITIRI
101: AGRTDLYHLQ QFLKGRQRDM PQETIQVLDV VLRESPSWNY VTVSRSFFST TFGHRGDIGE GLECWRGYYQ SLRPTQMGLS LNIDISATSF FKPVTVVQFV
201: LEFLNLRDAS RPLTDRDRVK IKKALRGVRV ETNHQEDQIR RYKITGITPV PMSQLIFPVD ERGTRMSVVQ YFMQRYKYNL QYTSWPCLQS GSDARPVYLP
301: MEACKIVEGQ RYSKKLNDKQ VTNILRATCQ RPQQREQSIR EMVLHNKYAE DKFAQEFGIN VCSDLVSVPA RVLPPPMLRY HDSGKEKTCA PSVGQWSMIN
401: KKMINGGIID NWSCVSFSRI PPEEVHRFCC DLIQMCNMTG MSVNPRPLVD NRSANPNHIE NALRDVYRRT TEMLGKQGHE KQLQLLIVIL PEVSGSYGKI
501: KKVCETDLGI VSQCCLPRHA ARPNKQYLEN VALKINVKVG GRNTVLERAF VRNGIPFVSE VPTIIFGADV THPPPGEDSA SSIAAVVASM DWPEITKYRG
601: LVSAQPHRQE IIEDLFSVTK DPKRGNVNGG MIRELLIAFR RKTGRRPERI LFYRDGVSEG QFSHVLLHEM DAIRKACASL EEGYMPPVTF VVVQKRDHTR
701: LFPDVHGRRD MTDKSGNILP GSVFELMTCH PTDFGFYLCN NTNIQGTSCN YHVLYDENNF TADALQSLTK KLCNTYARCV PGLSTVAPAF YAHVKARVCT
801: RHYMEGDGST GELNIKLLGG GDNPDTGRSR KRPREEESGS SSQSADHPTL GGNRISNIST FLPKGKNLPY FEGFLTFIEK SKFRNHPELL PYKRRPLVFM
901: SPLERLLLWI IF

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.