Factsheet for TraesCS2B01G195200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G176500.1	Wheat	golgi, unclear	95.63	92.96
TraesCS2A01G168900.1	Wheat	cytosol	94.94	92.29
HORVU2Hr1G031130.2	Barley	cytosol, nucleus	74.31	88.85
OQU88608	Sorghum	plastid	59.72	68.33
Zm00001d015926_P001	Maize	nucleus	14.68	65.78
Zm00001d018436_P001	Maize	cytosol	7.64	63.11
TraesCS4B01G026600.1	Wheat	cytosol	29.86	62.06
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	14.19	61.9
TraesCS5B01G454200.1	Wheat	cytosol	41.17	61.48
TraesCS3B01G027100.1	Wheat	cytosol	9.23	60.78
Os07t0188000-01	Rice	nucleus	62.8	60.17
TraesCS3B01G287600.1	Wheat	nucleus	53.87	59.93
TraesCS5B01G468000.1	Wheat	plastid	51.88	59.91
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	56.94	58.27
Zm00001d007786_P001	Maize	nucleus	59.62	58.24
TraesCS5B01G451400.2	Wheat	plastid	60.81	57.83
TraesCS5B01G452500.1	Wheat	nucleus	51.49	56.91
CDX71410	Canola	nucleus	51.19	54.2
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.26	53.97
KRH30536	Soybean	plastid	47.62	53.93
CDY04517	Canola	plastid	50.99	53.71
Bra011993.1-P	Field mustard	plastid	51.09	53.31
KRH25139	Soybean	plastid	50.5	52.97
TraesCS4B01G024000.1	Wheat	nucleus	52.58	51.76
TraesCS7B01G256500.1	Wheat	cytosol	49.01	51.67
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	51.09	51.66
Zm00001d025691_P001	Maize	mitochondrion	9.92	51.28
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	42.66	50.53
TraesCS6B01G206700.1	Wheat	plastid	46.43	49.37
TraesCS6B01G466700.1	Wheat	nucleus	49.11	48.86
Solyc06g074730.2.1	Tomato	nucleus	48.81	48.66
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	49.01	48.2
TraesCS2B01G421000.2	Wheat	nucleus	52.58	48.09
TraesCS7B01G482100.1	Wheat	nucleus	49.01	47.87
TraesCS3B01G135800.1	Wheat	cytosol	39.58	47.44
TraesCS6B01G270900.1	Wheat	nucleus	50.6	47.0
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	37.5	44.52
TraesCS5B01G458100.1	Wheat	cytosol	39.98	42.42
TraesCS7B01G437900.1	Wheat	cytosol	26.98	33.71
TraesCS7B01G437700.1	Wheat	nucleus	28.67	32.88
TraesCS1B01G480100.1	Wheat	nucleus	29.66	32.25
TraesCS5B01G162300.1	Wheat	mitochondrion	28.57	32.07
TraesCS7B01G450300.1	Wheat	nucleus	28.47	31.23
TraesCS2B01G434000.1	Wheat	nucleus	32.24	30.95
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	28.97	30.93
TraesCS2B01G439000.2	Wheat	nucleus, unclear	31.35	30.21
TraesCS7B01G373400.1	Wheat	nucleus	23.31	29.9
TraesCS7B01G450200.2	Wheat	nucleus	27.28	29.7
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	22.22	27.9
TraesCS2B01G438200.1	Wheat	nucleus	26.79	25.26

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS2B01G195200
EnsemblPlants:TraesCS2B01G195200.2	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:172672545..172679159

Molecular Weight (calculated)

109299.0 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.382

Length

1008 amino acids

Sequence
(BLAST)

0001: MASRGFGSGG GRGGRGDGAG RRPGGRGDGR GRGSGGRGEA GGGGYGRGPG APTPAAGGYN QQAPPARVDA GGRGPGVPAG FRPAAPRPAA PAVPASASTS
0101: SSRAPPSSAT TAPADALARD VGRLTVEAPP APRSSAPAAA GAPALRPPVL PAAAGGSQPE SQAPAPAPPA AAPVSSKSVA QPGRPGFGTA GRKMIVRANH
0201: FLVGFADKDI CHYDVAITPE PKTRRINRIL MTELTSKHRA SSLGGLLAAY DGSKSLYTAG ELPFQAMDFS IKLGKPPRET EYKVKVQFAA RANLYHLQQF
0301: LSGRQRDSPQ DTIQALDVVL RESPSLNYVT VSRSFYSTIF GQRDIGDGLE CWRGYYQSLR PTQMGLSLNI DISSMPFYKS ISVIQFVQEC LNMRNADPNR
0401: PLSDRDRLKL KKALRGIRVE TTHQEGKRSA YKITGITSVP LIQLNFPLDD GNQMTVVQYF WGRYKYRLRF TSWPCLQSGN DSRPIYLPME VCTIIEGQRF
0501: TRKLNEKQVT GILRATCERP HDREKSILKM VQHNNYSADK LAQEFGIDVT DKMVNVQARV LPPPMLKYHE SGKDKACAPS VGQWNMIGKK MINGGNVQRW
0601: TCLNFSRLHI DGVERFCGDL VKMCNAIGMV FNPSPVVEIL SASANNIEGA LKHAHQRAPD LQLLIVILPD VTGHYGKVKK VCETDLGIVS QCLKPDKVER
0701: ANKQYFENVA LKVNVKVGGR NTALQQALKR QIPLVTDKPT IFFGADVTHP AAGDDSSPSI AAVVASMDWP EITKYKAVVS AQPPRQEIIQ DLYCRGTDPE
0801: KGTPVHGGMM RELLVSFYQK TKHKPSRIIF YRDGVSEGQF AQVLMYEMDA IRKACASLQD DYQPPVTFVV VQKRHHTRLF PEVHGKETDK SGNILPGTVV
0901: DTNICHPTEF DFYLCSHAGI QGTSRPTHYH VLFDENSFTA DGLQVLTNNL CYTYARCTRS VSVVPPAYYA HLAAFRARYY DEPSEGSDSA SIVSGGTRDS
1001: AATGAGAA

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.