Factsheet for TraesCS2D01G176500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G168900.1	Wheat	cytosol	96.53	96.53
TraesCS2B01G195200.2	Wheat	nucleus	92.96	95.63
HORVU2Hr1G031130.2	Barley	cytosol, nucleus	73.77	90.75
Zm00001d015926_P001	Maize	nucleus	15.43	71.11
OQU88608	Sorghum	plastid	59.69	70.26
Zm00001d018436_P001	Maize	cytosol	7.81	66.39
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.89	62.34
TraesCS4D01G024100.1	Wheat	plastid	51.4	62.19
Os07t0188000-01	Rice	nucleus	62.49	61.6
TraesCS5D01G454600.1	Wheat	cytosol	43.68	61.13
TraesCS4D01G024300.1	Wheat	cytosol	31.73	59.82
Zm00001d007786_P001	Maize	nucleus	59.21	59.5
TraesCS7D01G552900.1	Wheat	mitochondrion	26.04	59.34
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	60.17	59.26
TraesCS7D01G553200.1	Wheat	nucleus, plastid	26.42	57.2
CDX71410	Canola	nucleus	51.3	55.88
CDY04517	Canola	plastid	50.92	55.17
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	54.68	54.94
Bra011993.1-P	Field mustard	plastid	51.01	54.76
KRH25139	Soybean	plastid	50.43	54.42
KRH30536	Soybean	plastid	46.67	54.38
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	50.82	52.86
TraesCS7D01G351700.1	Wheat	cytosol	48.22	52.52
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	42.33	51.59
Zm00001d025691_P001	Maize	mitochondrion	9.64	51.28
TraesCS2D01G400200.1	Wheat	nucleus	52.65	49.68
TraesCS6D01G166300.1	Wheat	plastid	45.52	49.63
Solyc06g074730.2.1	Tomato	nucleus	48.12	49.36
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	48.6	49.17
TraesCS7D01G553000.1	Wheat	cytosol	48.51	48.79
TraesCS6D01G403900.1	Wheat	plastid	49.57	48.72
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	39.25	48.45
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	50.14	46.72
TraesCS1D01G151300.3	Wheat	plastid	37.61	45.94
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.05	45.35
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	52.27	44.79
TraesCS5D01G192700.2	Wheat	nucleus	35.29	38.81
TraesCS7D01G458800.1	Wheat	nucleus	16.2	36.05
TraesCS5D01G169500.1	Wheat	cytosol	28.64	33.67
TraesCS1D01G453600.1	Wheat	nucleus	29.22	32.86
TraesCS7D01G520400.1	Wheat	nucleus	28.25	32.23
TraesCS3D01G191600.5	Wheat	nucleus	29.03	30.04
TraesCS2D01G412100.1	Wheat	plastid	32.3	29.99
TraesCS2D01G417000.1	Wheat	nucleus	30.18	29.87
TraesCS7D01G458900.1	Wheat	mitochondrion	4.53	25.82
TraesCS2D01G416500.1	Wheat	nucleus	25.94	25.45

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS2D01G176500
EnsemblPlants:TraesCS2D01G176500.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:119944959..119951926

Molecular Weight (calculated)

112449.0 Da

IEP (calculated)

9.765

GRAVY (calculated)

-0.358

Length

1037 amino acids

Sequence
(BLAST)

0001: MASRGVGSGG GRGGRGDGAG RRPGGRGDGR GRGSGGRGEA GGGGYGGGDG GGRGPGAPTP GAGGYNQQAP PARVDAGGRG PGGPAGFRPA APRPAAPAVP
0101: AAASTSSSRA PPSAATMAPA DALARDVGRL TVEAPAAPRS SAPAAAGAPA LRPPAQPAAA GGSQPESQAP APAPPAAAPV SSKSVAPPGR PGFGTAGRKM
0201: IVRANHFLVG FADKDICHYD VAITPEPKTR RINRVLMTEL TSKHRASSLG GLLVAYDGSK SLYTAGELPF QVMDFSIKLG KPPRETEYKV TIHFAARANL
0301: YHLQRFLSGK QRDSPQDTIQ ALDVVLRESP SLNYVTVSRS FYSTIFGQRD IGDGLECWRG YYQSLRPTQM GLSLNIDISS TPFYKPISVM QFAQECLNLR
0401: NADPNRPLSD RDRLKLKKAL RGIRVETTHQ EGKRSAYKIT GITSVPLIQL NFPLDDGNQM TVVQYFWGRY KYRLRFTSWP CLQSGNDSRP IYLPMEVCTI
0501: IEGQRFTRKL NEKQVTGILR ATCERPRDRE KSILKMVEHN NYSADKLAQE FGIDVTDKMV NVQARVLPPP MLKYHESGKD KACAPSVGQW NMIGKKMING
0601: GNVQRWTCLN FSRLHIDGVK RFCGDLVKMC NAIGMVFNPM PVVEILSASA NNIEGALKHA HQSAHNLQLL IVILPDVTGH YGKVKKVCET DLGIVSQCLK
0701: PDKVERANKQ YFENVALKVN VKVGGRNTAL QQALTRQIPL VTDLPTIFFG ADVTHPAAGD DSSPSIAAVV ASMDWPEITK YKAVVSAQLP RQEIIQDLYC
0801: TGTDPEKGTP VHSGMMRELL VSFFQKTKHK PSRIIFYRDG VSEGQFAQVL MYEMDAIRKA CASLQEDYQP PVTFVVVQKR HHTRLFPEVH GKETDKSGNI
0901: LPGTVVDTNI CHPTEFDFYL CSHAGIQGTS RPTHYHVLFD ENRFTADGLQ LLTNNLCYTY ARCTRSVSVV PPACYAHLAA FRARYYDEPL EGWDSASIVS
1001: GGTRESAATG TGAAGPPVTF RRLPRIRDNV KDVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.