Factsheet for TraesCS4D01G024100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G288300.1	Wheat	plastid	97.43	97.43
TraesCS4B01G026600.1	Wheat	cytosol	53.56	94.64
TraesCS5B01G468000.1	Wheat	plastid	96.15	94.39
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	22.05	92.65
TraesCS4D01G024300.1	Wheat	cytosol	46.79	72.91
TraesCS7D01G552900.1	Wheat	mitochondrion	33.37	62.86
TraesCS7D01G553200.1	Wheat	nucleus, plastid	34.19	61.17
TraesCS5D01G454600.1	Wheat	cytosol	49.83	57.62
CDX71410	Canola	nucleus	59.39	53.47
CDY04517	Canola	plastid	59.39	53.19
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	63.83	53.0
TraesCS7D01G351700.1	Wheat	cytosol	58.69	52.84
Bra011993.1-P	Field mustard	plastid	59.39	52.69
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	51.93	52.29
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	63.48	51.66
KRH25139	Soybean	plastid	57.76	51.51
TraesCS2D01G176500.1	Wheat	golgi, unclear	62.19	51.4
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	59.51	51.15
KRH30536	Soybean	plastid	52.98	51.01
TraesCS6D01G166300.1	Wheat	plastid	54.96	49.53
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	57.99	48.49
TraesCS7D01G553000.1	Wheat	cytosol	58.23	48.4
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	20.07	47.91
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	46.91	47.86
Solyc06g074730.2.1	Tomato	nucleus	56.36	47.77
TraesCS6D01G403900.1	Wheat	plastid	58.11	47.2
GSMUA_Achr6P04510_001	Banana	nucleus	67.21	46.56
TraesCS2D01G400200.1	Wheat	nucleus	59.04	46.04
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.0	45.54
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	58.11	44.74
TraesCS1D01G151300.3	Wheat	plastid	43.76	44.17
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	59.16	41.9
TraesCS7D01G458800.1	Wheat	nucleus	20.07	36.91
TraesCS5D01G192700.2	Wheat	nucleus	39.79	36.16
TraesCS5D01G169500.1	Wheat	cytosol	34.66	33.67
TraesCS1D01G453600.1	Wheat	nucleus	35.36	32.86
TraesCS7D01G520400.1	Wheat	nucleus	33.72	31.79
TraesCS3D01G191600.5	Wheat	nucleus	35.94	30.74
TraesCS2D01G412100.1	Wheat	plastid	38.74	29.72
TraesCS2D01G417000.1	Wheat	nucleus	32.56	26.62
TraesCS7D01G458900.1	Wheat	mitochondrion	5.6	26.37
TraesCS2D01G416500.1	Wheat	nucleus	28.0	22.71

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS4D01G024100
EnsemblPlants:TraesCS4D01G024100.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:10684336..10690389

Molecular Weight (calculated)

96623.3 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.333

Length

857 amino acids

Sequence
(BLAST)

001: MEPRVPAAPA NLPPVSSKAE KFPARPGFGT IGRRCRVRAN HFLVQVADKE IYHYDVAIDP ETRSRGWNRS IINELVKLYK EHLDGRLPVY DGRKSLYTAG
101: ALPFKNKVFV VKLANAAKGN KREEEYKVTV KLASNLDMYS LRQFLAGRSR DVPQDTIQAL DIALRECPTT KYVSISRSFF SQSFEHGGAI GNGVECWRGY
201: YQSLRPTQMG LSLNIDISAT AFYKAQAVMD FAVEYLNIRD ASRPLIDQDR IKLKKALRGI RVEATHRTDK TIRYKITSLS SAPLKELMFD QDGVRVSVVQ
301: YFKKQYNYSL KYINWPCLQA GSDSRPLYLP MEVCSIVGGQ RYSRKLNERQ VSSILKMACE RPAQRESSVL EVVNRNNYGN DDYSKEFGMK VMNQLALVDA
401: RVLPSPRLKY HDSGREKVCN PSVGQWNMIN KRMVNGGSIN HWACLTFASR LHPNDIGMFC RDLAHMCNNI GMDTVESAIR NIHRHSAEVL TKQGLEGKQL
501: ELLIIILPDI SGSYGKIKRL CETELGVITQ CCLPKNVQKG GKQYLENLSL KINVKVGGRN TVLEDALYKR IPLLTDVPTI VFGADVTHPA AGEDASPSIA
601: AVVASMDWPE VTKYKCLVSS QGPREEIIAD LYTETMDPQK GRVGGGMIRE LLLSFYRATG CKPHRIIFYR DGVSEGQFSQ VLLYEMDAIR KACATLQAGY
701: LPPVTFVVVQ KRHHTRLFPE NHRARDLTDR SGNILPGTVV DTKICHPTEF DFYLCSHAGI QGTSRPTHYH VLLDENRFSA DALQTLTYNL CYTYARCTRS
801: VSIVPPAYYA HLAAFRARYY MEDEFSDGGS SSATARSAPA RQLPKIRDSV KEFMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.