Factsheet for TraesCS6D01G235900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G270900.1	Wheat	nucleus	93.71	96.13
TraesCS6A01G254600.2	Wheat	plastid	93.53	95.94
KRG99173	Soybean	cytosol	11.86	84.62
Os02t0672200-01	Rice	cytosol	79.16	81.42
TraesCS2D01G400200.1	Wheat	nucleus	77.99	78.98
TraesCS7D01G552900.1	Wheat	mitochondrion	31.72	77.58
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	53.91	77.22
TraesCS7D01G553200.1	Wheat	nucleus, plastid	32.34	75.16
Solyc03g098280.2.1	Tomato	nucleus	65.5	74.39
Solyc06g072300.2.1	Tomato	nucleus	69.72	73.62
PGSC0003DMT400069313	Potato	cytosol	69.54	73.43
CDY04311	Canola	cytosol, nucleus, plastid	63.79	72.45
CDY41831	Canola	nucleus	67.48	71.93
CDY68174	Canola	nucleus	67.66	71.58
AT1G48410.2	Thale cress	nucleus	67.3	71.33
VIT_17s0053g00680.t01	Wine grape	nucleus	69.27	71.06
GSMUA_Achr7P04100_001	Banana	extracellular	15.81	70.97
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	76.28	70.17
Bra014136.1-P	Field mustard	nucleus	68.01	70.16
TraesCS7D01G351700.1	Wheat	cytosol	58.49	68.38
PGSC0003DMT400079716	Potato	nucleus	69.0	68.15
TraesCS6D01G403900.1	Wheat	plastid	64.24	67.77
Bra032254.1-P	Field mustard	nucleus	67.21	67.33
CDY23683	Canola	cytosol, nucleus, plastid	65.41	67.03
TraesCS7D01G553000.1	Wheat	cytosol	61.99	66.93
TraesCS6D01G166300.1	Wheat	plastid	54.36	63.62
TraesCS4D01G024300.1	Wheat	cytosol	29.92	60.55
TraesCS4D01G024100.1	Wheat	plastid	44.74	58.11
TraesCS1D01G151300.3	Wheat	plastid	43.4	56.89
TraesCS5D01G454600.1	Wheat	cytosol	37.2	55.87
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	40.61	53.81
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	48.16	50.9
TraesCS2D01G176500.1	Wheat	golgi, unclear	46.72	50.14
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.47	45.35
TraesCS7D01G458800.1	Wheat	nucleus	16.71	39.91
TraesCS5D01G169500.1	Wheat	cytosol	28.66	36.17
TraesCS7D01G520400.1	Wheat	nucleus	28.75	35.2
TraesCS1D01G453600.1	Wheat	nucleus	29.11	35.14
TraesCS5D01G192700.2	Wheat	nucleus	29.47	34.78
TraesCS3D01G191600.5	Wheat	nucleus	29.56	32.83
TraesCS2D01G412100.1	Wheat	plastid	31.18	31.07
TraesCS2D01G417000.1	Wheat	nucleus	27.85	29.58
TraesCS7D01G458900.1	Wheat	mitochondrion	4.58	28.02
TraesCS2D01G416500.1	Wheat	nucleus	23.63	24.88

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PFscan:PS51257	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS6D01G235900	EnsemblPlants:TraesCS6D01G235900.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:332542183..332556317

Molecular Weight (calculated)

124063.0 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.468

Length

1113 amino acids

Sequence
(BLAST)

0001: MIKTVRGCKQ YMDAVDLLSL QVVAICGCCL LSYHETNDVR DGSASTMVKN KRYTPPSARG STETRNAPRT PGQDPSQRVE RAQQHGGGDR LHTNTQYSQQ
0101: GGRGGGQHLR CGGHFQDPAS HQPFGGPVKY QAHGYYGHGA PRQRGTPQPY HDGRRSGSHG RGVPATPSVT LPELHQAPQL QNQVPVLTPS PPETGSSSLH
0201: VEMNTRQVQL QFQQLDIPGQ SSSRQGIQSA PSSTKSVRFP VRPGKGTFGS RCIVKANHFS AELPDKDLHQ YDVSITPDIP SRGVNRAIIG QLVTLYRHSL
0301: LGGRLPAYDG RKSLYTAGPL PFTSRTLNIV LQDEDDKLGG VQVAQRREKH FTVVIKFAAR ADLHHLAMFL AGKQPDAPQE AIQVLDIVLR ELPTARYSPV
0401: ARSFYSPNLG RRQQLGDGLE SWRGFYQSIR PTQMGLSLNI DMSSTAFIEP LPVIDFVAQL LNRNVSVRPL SDADRVKIKK ALRGVKVEVT HRGNMRRKYR
0501: IFGLTSQATR ELTFPIDDHG TVKTVLKYFQ ETYGFNIQHT TLPCLQVGNQ QRPNFLPMEV CKIVEGQRYS KRLNEKQITA LLKVTCQHPQ QRELDILQTV
0601: NHNAYHEDPY AREFGIRIDE RLASVEARVL PPPRLKYHDS GREKDVLPRI GLWNMRNKKM VNGGRVKEWI CINFARNVQD GAARSFCRQL ADMCEISGMD
0701: FSKEPLLPPL CTRPEHVERA LKAHYQDAMS ALKPLGRELD LLIAILPDNN GSLYGNLKRI CETDLGLVSQ CCLAKHVFKT TQQYLANVAL KINVKVGGRN
0801: TVLVDALSRR IPLVSDRPTI IFGADVTHPH PGEDSSPSIA AVVASQDWPE VTKYAGLVSA QTRRQELIQD LFKVWQDPQR GTVNGGMVRE LLLSFHRSTG
0901: QKPQRIIFYR DGVSEGQFYQ VLLYELDAIR KACASLESNY QPPVTFVVVQ KRHHTRLFAN NHNDQRSVDP KSGNILPGTV VDSKICHPTE FDFYLCSHAG
1001: IQGTSRPAHY HVLWDENNFT ADGLQTLTNN LCYTYARCTR SVSIVPPAYY AHLAAFRARF YMEPDTSDGG SVASGATTSR APAGARCGRA AGNAAVKPLP
1101: DLKENVKRVM FYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.