Factsheet for TraesCS1D01G151300.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	97.76	97.76
TraesCS2A01G258200.1	Wheat	cytosol	50.41	64.26
KRG99173	Soybean	cytosol	11.66	63.46
TraesCS2A01G258100.1	Wheat	mitochondrion	61.13	59.25
TraesCS7D01G552900.1	Wheat	mitochondrion	30.27	56.48
TraesCS7D01G553200.1	Wheat	nucleus, plastid	30.98	54.91
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	45.82	50.06
TraesCS4D01G024300.1	Wheat	cytosol	31.21	48.18
Solyc03g098280.2.1	Tomato	nucleus	55.01	47.65
TraesCS7D01G351700.1	Wheat	cytosol	52.41	46.74
Os02t0169400-01	Rice	nucleus	47.82	46.35
CDY04311	Canola	cytosol, nucleus, plastid	52.89	45.82
Solyc06g072300.2.1	Tomato	nucleus	56.54	45.54
PGSC0003DMT400069313	Potato	cytosol	56.3	45.35
CDY41831	Canola	nucleus	55.24	44.92
TraesCS2D01G400200.1	Wheat	nucleus	58.07	44.86
AT1G48410.2	Thale cress	nucleus	55.24	44.67
CDY68174	Canola	nucleus	55.24	44.58
VIT_17s0053g00680.t01	Wine grape	nucleus	56.77	44.42
TraesCS6D01G166300.1	Wheat	plastid	49.71	44.37
TraesCS4D01G024100.1	Wheat	plastid	44.17	43.76
TraesCS6D01G403900.1	Wheat	plastid	54.18	43.6
Bra014136.1-P	Field mustard	nucleus	55.36	43.56
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	56.89	43.4
TraesCS5D01G454600.1	Wheat	cytosol	37.69	43.18
TraesCS7D01G553000.1	Wheat	cytosol	52.3	43.06
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	42.52	42.98
PGSC0003DMT400079716	Potato	nucleus	56.42	42.5
Bra032254.1-P	Field mustard	nucleus	55.01	42.03
CDY23683	Canola	cytosol, nucleus, plastid	53.59	41.9
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	57.13	40.08
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	47.0	37.89
TraesCS2D01G176500.1	Wheat	golgi, unclear	45.94	37.61
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.2	37.38
TraesCS7D01G458800.1	Wheat	nucleus	19.32	35.19
TraesCS5D01G169500.1	Wheat	cytosol	29.92	28.8
TraesCS1D01G453600.1	Wheat	nucleus	31.21	28.74
TraesCS7D01G520400.1	Wheat	nucleus	30.62	28.6
TraesCS3D01G191600.5	Wheat	nucleus	31.33	26.55
TraesCS2D01G412100.1	Wheat	plastid	33.1	25.16
TraesCS5D01G192700.2	Wheat	nucleus	27.92	25.13
TraesCS7D01G458900.1	Wheat	mitochondrion	5.18	24.18
TraesCS2D01G417000.1	Wheat	nucleus	29.56	23.95
TraesCS2D01G416500.1	Wheat	nucleus	27.92	22.42

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PFscan:PS51257	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS1D01G151300
EnsemblPlants:TraesCS1D01G151300.3	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:209510207..209519101

Molecular Weight (calculated)

95247.8 Da

IEP (calculated)

9.216

GRAVY (calculated)

-0.216

Length

849 amino acids

Sequence
(BLAST)

001: MVRKNKNRHS SGGRGGRIGS GPSSTVSCSI PELQKFVPGE SLKRPGFVSA GESYIVKANH FKLTYNETLC RYHVLIDPKP TSAGDVMIQL AKLYGQSRLG
101: GRLRAYDGKK SLYTSRPFPF TCEAFKVTLP DQENILCGLP RGKRHFRVQI TLDKVLFGRI DSEEFYQAFN TILRELFLGR YCLVGRSFYK SQPGEGLKNC
201: CGFYQRIQNT QMGISLNIDI SCKPFINPLP VINLVALLLN RDISDDPFDF CERLKVSKDL CDVEVNFTLE KNADKKYRIT GLTSQGSSQL PCPCDDSGTG
301: KTVVEYFKET YRRTIWSRVP CLKVRDQEKP TTYLPMEVCE ISDAKQISYL LSVACQHPMD HEKTILQTVN PYNEDPHAKE FGITFENKLT IVKGRVLPPP
401: VLKFNDQGKV KEFLPKVGKW NMRLKQMVKG GEVNTWACIN FASDITHAAA VAFCDELAVM CVISGMNFKG DPVLPLVNAK PNHVRPFLKK HYQRFMEILR
501: PLHKELDLLI VILPDKNGTL YGDIKRICET DLGLVSQCCL AKHVLKMKPQ YLTNIALKIN MKVGGRNTVL LDAVVGNLPR VSNTPTIIFG ADVSHPHHGE
601: GRSSPSIAAV VASQDWPEVT NYAGLVRPQA RHEEIIQGLF NENDCGSGCI SGGMIKEHLI SFMRSTGHIP RRIIFYRDVV SKGRLNMVLE HELSAIKKAC
701: ASLDPIYNPQ VTIIMVQKQH HTRLFAGNYG VGSTIFQSGN VLPGTVVDKE ICHPTDFDFY LCSHAGTKGV SRPVRYHVLW DENNFTANAL QILTNHLCYT
801: DARCTSSVSI VPPVHYAHLL ASRARLYIGY KGKLPDIKDN VKKRGMFFC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.