Factsheet for TraesCS7D01G552900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G553200.1	Wheat	nucleus, plastid	98.02	93.11
TraesCS4D01G024300.1	Wheat	cytosol	59.12	48.91
TraesCS7D01G553000.1	Wheat	cytosol	98.46	43.45
TraesCS7A01G557400.1	Wheat	plastid	98.46	43.41
TraesCS7B01G482100.1	Wheat	nucleus	98.24	43.31
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	70.99	41.57
HORVU7Hr1G120600.3	Barley	cytosol, nucleus	96.92	41.45
Os06t0729300-01	Rice	nucleus	88.13	38.63
KXG20965	Sorghum	nucleus	87.47	37.98
Solyc03g098280.2.1	Tomato	nucleus	77.14	35.82
TraesCS6D01G403900.1	Wheat	plastid	81.76	35.26
TraesCS7D01G351700.1	Wheat	cytosol	73.41	35.08
TraesCS7D01G458800.1	Wheat	nucleus	34.95	34.12
Solyc06g072300.2.1	Tomato	nucleus	78.46	33.87
PGSC0003DMT400069313	Potato	cytosol	78.24	33.78
CDY04311	Canola	cytosol, nucleus, plastid	72.53	33.67
TraesCS4D01G024100.1	Wheat	plastid	62.86	33.37
Zm00001d014875_P001	Maize	nucleus	79.12	33.36
VIT_17s0053g00680.t01	Wine grape	nucleus	78.68	33.0
TraesCS5D01G454600.1	Wheat	cytosol	53.63	32.93
TraesCS2D01G400200.1	Wheat	nucleus	79.34	32.85
AT1G48410.2	Thale cress	nucleus	75.6	32.76
CDY68174	Canola	nucleus	75.38	32.6
CDY41831	Canola	nucleus	74.73	32.57
TraesCS6D01G166300.1	Wheat	plastid	67.25	32.18
Bra014136.1-P	Field mustard	nucleus	75.38	31.79
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	77.58	31.72
PGSC0003DMT400079716	Potato	nucleus	77.36	31.23
Bra032254.1-P	Field mustard	nucleus	75.38	30.87
CDY23683	Canola	cytosol, nucleus, plastid	72.31	30.29
TraesCS1D01G151300.3	Wheat	plastid	56.48	30.27
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	79.34	29.83
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	52.53	28.45
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.09	27.7
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	61.76	26.69
TraesCS2D01G176500.1	Wheat	golgi, unclear	59.34	26.04
TraesCS5D01G169500.1	Wheat	cytosol	35.82	18.48
TraesCS1D01G453600.1	Wheat	nucleus	37.14	18.33
TraesCS2D01G412100.1	Wheat	plastid	43.52	17.73
TraesCS7D01G520400.1	Wheat	nucleus	35.16	17.6
TraesCS3D01G191600.5	Wheat	nucleus	36.7	16.67
TraesCS2D01G417000.1	Wheat	nucleus	36.92	16.03
TraesCS2D01G416500.1	Wheat	nucleus	32.75	14.1
TraesCS5D01G192700.2	Wheat	nucleus	27.47	13.26
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS7D01G552900.1	EnsemblPlantsGene:TraesCS7D01G552900	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
ncoils:Coil	PANTHER:PTHR22891	PANTHER:PTHR22891:SF57	PFAM:PF02171	PFscan:PS50822	SEG:seg
SMART:SM00950	SUPFAM:SSF53098	TIGR:cd04657	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7D:-:635676798..635691331

Molecular Weight (calculated)

50669.1 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.184

Length

455 amino acids

Sequence
(BLAST)

001: MMNMKMVNGA RVKSWLCFSF ARNVQESMIT GFCRELARMC QASGMDFALE PVLPVIYVRP DQVERGLKAR FHDAMTALGP QRKEIELLIG ILPDNNGSLY
101: GDLKRVCEID LGLISQCCLT KQVFKMNKQI LANLSLKINV KVGGRNTVAD ALTRRIPLVT DKPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEVTKYA
201: GLVSAQTHRQ ELIEDLYNVT HDPQRGTIHG GMVRELLISF KRTTGEKPER IIFYRDGVSE GQFYQVLLHE LDAIRKACAS LEANYQPLVT FVVVRKRHHT
301: RLFAHNHNDQ STVDKSGNIL PGTVIDSKIC HPTEFDFFLC SHAGIKGTSR PAHYHVLWDE NNFIADGLQT LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF
401: RARFYMEPDS SDSGSISSAR KSGSSTSRST RAAGAGVVRP LPALKDSVKK VMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.