Factsheet for TraesCS6D01G403900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G081900.1	Wheat	plastid	90.33	97.44
TraesCS6B01G466700.1	Wheat	nucleus	90.33	94.08
Os02t0831600-01	Rice	extracellular	79.91	83.38
TraesCS7D01G552900.1	Wheat	mitochondrion	35.26	81.76
TraesCS7D01G553200.1	Wheat	nucleus, plastid	36.3	79.96
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	55.92	75.93
TraesCS7D01G553000.1	Wheat	cytosol	72.13	73.81
Solyc03g098280.2.1	Tomato	nucleus	67.49	72.65
CDY04311	Canola	cytosol, nucleus, plastid	66.35	71.43
OQU86027	Sorghum	plastid	74.31	71.01
Solyc06g072300.2.1	Tomato	nucleus	70.52	70.59
PGSC0003DMT400069313	Potato	cytosol	70.43	70.49
AT1G48410.2	Thale cress	nucleus	68.25	68.57
CDY68174	Canola	nucleus	68.15	68.35
CDY41831	Canola	nucleus	67.49	68.2
VIT_17s0053g00680.t01	Wine grape	nucleus	69.76	67.83
TraesCS2D01G400200.1	Wheat	nucleus	70.24	67.42
Bra014136.1-P	Field mustard	nucleus	68.25	66.73
TraesCS7D01G351700.1	Wheat	cytosol	60.19	66.7
Bra032254.1-P	Field mustard	nucleus	68.63	65.17
CDY23683	Canola	cytosol, nucleus, plastid	67.01	65.1
PGSC0003DMT400079716	Potato	nucleus	69.48	65.04
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	67.77	64.24
TraesCS6D01G166300.1	Wheat	plastid	56.02	62.15
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	69.38	60.5
TraesCS4D01G024300.1	Wheat	cytosol	31.18	59.82
TraesCS4D01G024100.1	Wheat	plastid	47.2	58.11
TraesCS5D01G454600.1	Wheat	cytosol	38.29	54.52
TraesCS1D01G151300.3	Wheat	plastid	43.6	54.18
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	43.03	54.05
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	49.67	49.76
TraesCS2D01G176500.1	Wheat	golgi, unclear	48.72	49.57
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.71	43.45
TraesCS7D01G458800.1	Wheat	nucleus	16.97	38.41
TraesCS5D01G169500.1	Wheat	cytosol	29.86	35.71
TraesCS1D01G453600.1	Wheat	nucleus	30.81	35.25
TraesCS7D01G520400.1	Wheat	nucleus	30.14	34.98
TraesCS5D01G192700.2	Wheat	nucleus	30.9	34.57
TraesCS3D01G191600.5	Wheat	nucleus	31.37	33.03
TraesCS2D01G412100.1	Wheat	plastid	32.23	30.44
TraesCS2D01G417000.1	Wheat	nucleus	29.0	29.2
TraesCS7D01G458900.1	Wheat	mitochondrion	4.83	28.02
TraesCS2D01G416500.1	Wheat	nucleus	24.93	24.88

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF34	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS6D01G403900
EnsemblPlants:TraesCS6D01G403900.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:471922215..471928826

Molecular Weight (calculated)

116825.0 Da

IEP (calculated)

10.057

GRAVY (calculated)

-0.489

Length

1055 amino acids

Sequence
(BLAST)

0001: MWAPRSTPLS SHFHHHQRFP PLLSSSIPPK QSRSQSEAVP TDRPIQQRGE ASSSPRPAGM GSRRGRPQQQ QYPPPARGGG RGPIPQQQGG GRGTQGFTAA
0101: PPQHPRHDAA AGRGRGRAAR GDGPSSPAPA AAGPLGRLPP ELRQAMEDPS PPPAQPVPVP AQAEAAAATG QAAIPASSKA IRFPLRPGKG SAGTRCLVKA
0201: NHFIAQLPDK DLHHYHVSIT PEVTSRVVNR AVIHELVNLH RAAYLGGRLP AYDGRKSLYT AGPLPFASKE FQITLLDDDD GSGAQRRQRN FKVVIKFAAR
0301: ADLHRLGMFL AGRHAEAPQE ALQVLDIVLR ELPSARYAPF GRSFFSPDLG RRQPLGDGLE SWRGFYQSIR PTQMGLSLNI DMSATAFIEP LPVIDYAAQL
0401: LRSDIHSRPL SDAERVKIKK ALRGVKVEVT HRGNMRRKYR ISGLTTQATR ELTFPVDEGG TVKSVVQYFQ ETYGFAIQHT YLPCLQVGNQ QRPNYLPMEV
0501: CKIVEGQRYS KRLNQNQIRA LLDETCQYPR DRERDITQMV KHNAYQEDPY AKEFGIKISD RLASVDARIL PAPRLKYNET GREKDCLPRV GQWNMMNKKM
0601: VNGGKVRSWM CVNFARNVPD KLARDFCHQL AQMCQDSGMD FALEPVLPPM SARPDQVERA LKARYHEAMN ILGPQRRELD LLIGILPDNN GSLYGDLKRV
0701: CEIDLGIVSQ CCCTKQVFKL NKQIYANIAL KINVKVGGRN TVLVDALSRR IPLVTDRPTI IFGADVTHPH PGEDSSPSIA AVVASQDWPE VTRYAGLVSA
0801: QAHRQELIED LYKVRQDPQK GPVSSGMIRE LLISFKKSTG EKPQRIIFYR DGVSEGQFYQ VLLFELNAIR KACASLEANY QPQVTFIVVQ KRHHTRLFAH
0901: NHNDKNSMDR SGNILPGTVV DTKICHPTEF DFYLCSHAGI KGTSRPAHYH VLWDENNFTA DGLQTLTNNL CYTYARCTRS VSIVPPAYYA HLAAFRARFY
1001: MEPESSDSGS MASGPGGRGP TSGSSASRGT RAPGGAAVKP LPALKDNVKN VMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.