Factsheet for TraesCS7D01G553200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G552900.1	Wheat	mitochondrion	93.11	98.02
TraesCS4D01G024300.1	Wheat	cytosol	56.99	49.64
TraesCS7D01G553000.1	Wheat	cytosol	96.03	44.62
TraesCS7A01G557400.1	Wheat	plastid	96.03	44.57
TraesCS7B01G482100.1	Wheat	nucleus	95.82	44.48
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	69.52	42.86
HORVU7Hr1G120600.3	Barley	cytosol, nucleus	94.57	42.58
Os06t0729300-01	Rice	nucleus	86.01	39.69
KXG20965	Sorghum	nucleus	85.39	39.03
Solyc03g098280.2.1	Tomato	nucleus	75.57	36.94
TraesCS6D01G403900.1	Wheat	plastid	79.96	36.3
TraesCS7D01G351700.1	Wheat	cytosol	71.4	35.92
PGSC0003DMT400069313	Potato	cytosol	76.83	34.91
Solyc06g072300.2.1	Tomato	nucleus	76.83	34.91
CDY04311	Canola	cytosol, nucleus, plastid	70.56	34.49
Zm00001d014875_P001	Maize	nucleus	77.45	34.38
TraesCS4D01G024100.1	Wheat	plastid	61.17	34.19
TraesCS7D01G458800.1	Wheat	nucleus	33.19	34.12
VIT_17s0053g00680.t01	Wine grape	nucleus	77.24	34.1
TraesCS5D01G454600.1	Wheat	cytosol	52.4	33.87
TraesCS2D01G400200.1	Wheat	nucleus	77.24	33.67
AT1G48410.2	Thale cress	nucleus	73.28	33.43
CDY68174	Canola	nucleus	73.07	33.27
CDY41831	Canola	nucleus	72.44	33.24
TraesCS6D01G166300.1	Wheat	plastid	65.55	33.02
Bra014136.1-P	Field mustard	nucleus	73.07	32.44
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	75.16	32.34
PGSC0003DMT400079716	Potato	nucleus	75.78	32.21
Bra032254.1-P	Field mustard	nucleus	73.07	31.5
TraesCS1D01G151300.3	Wheat	plastid	54.91	30.98
CDY23683	Canola	cytosol, nucleus, plastid	70.15	30.94
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	77.45	30.66
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.73	28.84
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	50.31	28.69
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	60.13	27.35
TraesCS2D01G176500.1	Wheat	golgi, unclear	57.2	26.42
TraesCS5D01G169500.1	Wheat	cytosol	35.28	19.16
TraesCS1D01G453600.1	Wheat	nucleus	36.12	18.76
TraesCS7D01G520400.1	Wheat	nucleus	34.24	18.04
TraesCS2D01G412100.1	Wheat	plastid	41.96	17.99
TraesCS3D01G191600.5	Wheat	nucleus	36.12	17.27
TraesCS2D01G417000.1	Wheat	nucleus	36.12	16.51
TraesCS5D01G192700.2	Wheat	nucleus	28.39	14.42
TraesCS2D01G416500.1	Wheat	nucleus	31.52	14.29
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:Argonaute_Mid_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR003165	InterPro:IPR036397	PFAM:PF02171	PFAM:PF16487
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF57	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00950	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7D01G553200	EnsemblPlants:TraesCS7D01G553200.1	TIGR:cd04657	SEG:seg

Description

No Description!

Coordinates

chr7D:+:636307737..636330988

Molecular Weight (calculated)

53237.1 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.197

Length

479 amino acids

Sequence
(BLAST)

001: MFGTMASLVV STGREKDGLP RVGQWNMMNM KMVNGARVKS WLCFSFARNV QESMITGFCR ELARMCQASG MDFALEPVLP VIYVRPDQVE RGLKARFHDA
101: MTALGPQRKE IELLIVPDNN GSLYGDLKRV CEIDLGLISQ CCLTKQVFKM NKQILANLSL KINVKVGGRN TVADALTRRI PLVTDKPTII FGADVTHPHP
201: GEDSSPSIAA VVASQDWPEV TKYAGLVSAQ THRQELIEDL YNVTHDPQRG TIHGGMVREL LISFKRTTGE KPERIIFYRD GVSEGQFYQV LLHELDAIRK
301: ACASLEANYQ PLVTFVVVQK RHHTRLFAHN HNDQSTVDKS GHGASCTVID SKICHPTEFD FFLCSHAGIK GTSRPAHYHV LWDENNFIAD GLQTLTNNLC
401: YTYARCTRSV SIVPPAYYAH LAAFRARFYM EPDSSDSGSI SSARKSGSST SRSTRAAGAG VVRPLPALKD SVKKVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.