Factsheet for TraesCS7D01G520400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G450300.1	Wheat	nucleus	88.12	87.16
TraesCS1D01G453600.1	Wheat	nucleus	78.77	77.66
Os04t0151800-02	Rice	nucleus	76.02	75.85
EES18816	Sorghum	nucleus	72.72	72.72
Zm00001d039214_P025	Maize	nucleus	71.95	70.78
PGSC0003DMT400070806	Potato	nucleus	21.89	68.15
GSMUA_Achr9P05150_001	Banana	nucleus	66.45	66.01
VIT_06s0009g01200.t01	Wine grape	nucleus	65.02	64.73
Solyc01g008960.2.1	Tomato	nucleus	63.81	63.81
KRH14678	Soybean	nucleus	63.26	63.47
KRH73469	Soybean	nucleus	63.26	63.47
PGSC0003DMT400058471	Potato	nucleus	63.26	63.26
PGSC0003DMT400069459	Potato	nucleus	63.37	63.09
Solyc06g073540.2.1	Tomato	nucleus	62.82	62.54
TraesCS3D01G191600.5	Wheat	nucleus	68.1	61.78
Solyc01g096750.1.1	Tomato	nucleus	59.74	61.63
CDY72062	Canola	plastid	20.02	61.28
KRG89867	Soybean	nucleus	63.7	61.14
Solyc06g073530.1.1	Tomato	nucleus	60.4	60.73
VIT_08s0040g00070.t01	Wine grape	nucleus	61.06	60.46
CDY48192	Canola	nucleus	61.28	60.41
AT5G21150.1	Thale cress	nucleus	59.52	60.38
Bra034318.1-P	Field mustard	nucleus	61.17	60.3
CDY56413	Canola	nucleus	61.17	60.24
AT2G27040.1	Thale cress	nucleus	61.17	60.17
CDX77061	Canola	nucleus	60.95	60.09
CDY04475	Canola	nucleus	60.95	60.02
TraesCS7D01G458800.1	Wheat	nucleus	29.92	58.37
VIT_13s0175g00140.t01	Wine grape	nucleus	56.33	57.85
CDY09103	Canola	nucleus	57.43	57.62
Bra020152.1-P	Field mustard	nucleus	57.43	57.62
CDX92417	Canola	nucleus	40.48	57.14
Bra002361.1-P	Field mustard	nucleus	57.21	57.08
CDX92405	Canola	nucleus	56.77	56.39
AT5G21030.2	Thale cress	cytosol	52.7	56.09
PGSC0003DMT400039204	Potato	cytosol	9.24	56.0
CDX92406	Canola	nucleus	55.67	55.97
CDY16587	Canola	nucleus	54.02	55.67
CDY59516	Canola	nucleus	55.23	55.41
TraesCS5D01G169500.1	Wheat	cytosol	52.92	54.54
Bra002360.1-P	Field mustard	nucleus	55.12	53.87
TraesCS7D01G458900.1	Wheat	mitochondrion	10.56	52.75
KRH56276	Soybean	cytosol	45.87	50.18
CDY16595	Canola	nucleus	50.72	50.11
Solyc03g111760.2.1	Tomato	mitochondrion	46.53	46.18
CDY62055	Canola	nucleus	23.87	37.67
TraesCS4D01G024300.1	Wheat	cytosol	21.34	35.27
TraesCS7D01G552900.1	Wheat	mitochondrion	17.6	35.16
TraesCS7D01G553200.1	Wheat	nucleus, plastid	18.04	34.24
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	31.35	33.93
TraesCS4D01G024100.1	Wheat	plastid	31.79	33.72
TraesCS7D01G351700.1	Wheat	cytosol	34.76	33.19
TraesCS5D01G454600.1	Wheat	cytosol	26.4	32.39
TraesCS6D01G166300.1	Wheat	plastid	33.0	31.55
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	18.04	31.12
TraesCS1D01G151300.3	Wheat	plastid	28.6	30.62
TraesCS7D01G553000.1	Wheat	cytosol	34.54	30.46
TraesCS6D01G403900.1	Wheat	plastid	34.98	30.14
TraesCS2D01G400200.1	Wheat	nucleus	35.42	29.3
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	33.88	29.25
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	35.2	28.75
Bra002349.1-P	Field mustard	nucleus	53.8	28.75
TraesCS2D01G176500.1	Wheat	golgi, unclear	32.23	28.25
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	35.2	26.45
TraesCS2D01G417000.1	Wheat	nucleus	26.73	23.19
TraesCS2D01G412100.1	Wheat	plastid	25.63	20.86
TraesCS5D01G192700.2	Wheat	nucleus	20.68	19.94
TraesCS2D01G416500.1	Wheat	nucleus	22.99	19.77

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7D01G520400	EnsemblPlants:TraesCS7D01G520400.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:618038397..618043411

Molecular Weight (calculated)

101521.0 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.404

Length

909 amino acids

Sequence
(BLAST)

001: MDPSDGGPEE LPPPPPLPPD VVPIKAEEDV AEELPPNKPT KPKRLPMARP GLGKRGHTIQ LLANHYKVSL KGSEEFFYHY HVNLKYEDDQ PVVEKGIGRK
101: VQDKLVQMYH SDLANKDFAY DGEKSLFTIG ALPQVHNEFT VVLEDIGSGN CRSSGGNSGN SPEGSDTKRV RRPYQSKIIK VELSFAAKIP MAAIAQAIRG
201: EESENSLEAI RVLDIILRQH SAKQGCLLVR QSFFHNNPKS FIDLGGGLLG CQGFHSSFRG AQSGLSLNID VSTTMLVKPG PVIDFLLANQ MVRRPDEINW
301: PKAKRALKSL KIKTTHTNSE FKIFGLSEKN CNEQTFPLRR RNGDNGDTDT VEITVYDYFV QNRGIELRYS GNLPCINAGR PKRPTYFPVE LCTLVPLQRY
401: TKALSTPQRS SLVEKSRQKP HQRMSTLGKA LKRSDYDSDP MLKACGISIA RNLPQIEGRI LSPPKLKAGD GEEFVPQKGR WNLARKKLIQ TCSVTRWAVV
501: NFSARCDVLG LVQGLKRIAS GLGIKMEDPL DDVFEESPSS RRDPVSKRVD KMVAQLESKL PEEPKFLLCL LPVKKNSEIY GPWKRKCLVE WGILTQCLAP
601: PPRVNDQYLI NVLLKINAKL DGLNTLLQGE QPPAPAVLPI VGKVPTIILG MDVSHGQPGQ SDRPSIAAVV NSREWPLISK YRATVHTQSP KLEMMSSLFK
701: PRRQGDDGLI RESLIDFYTS SGNRKPEQII IFRDGVSESQ FTQVINIELE QIIEACKLLD ETWQPKFTVI VAQKNHHTRF FQTQSPDNVP PGTVVDKQVC
801: HPKNFDFYMC AHAGMIGTSR PTHYHVLHDE IGFTADELQE FVHSLSYVYQ RSTTAISVFA WACSCSDYVC ASGTFVKFED MSDASSSQGG GHIPVPELHK
901: NVRTSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.