Factsheet for TraesCS5D01G454600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	51.82	84.03
TraesCS5B01G452500.1	Wheat	nucleus	95.01	77.19
EER90726	Sorghum	cytosol	77.87	67.96
Zm00001d032611_P002	Maize	vacuole	33.06	65.86
Zm00001d009158_P003	Maize	golgi	36.57	62.01
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	87.45	61.54
Os03t0800200-01	Rice	plasma membrane	80.3	56.24
TraesCS4D01G024300.1	Wheat	cytosol	41.16	55.45
TraesCS7D01G552900.1	Wheat	mitochondrion	32.93	53.63
TraesCS7D01G553200.1	Wheat	nucleus, plastid	33.87	52.4
Zm00001d013063_P001	Maize	nucleus	69.77	51.19
TraesCS4D01G024100.1	Wheat	plastid	57.62	49.83
TraesCS5D01G192700.2	Wheat	nucleus	58.16	45.71
Zm00001d036886_P001	Maize	plastid	13.63	44.69
CDX71410	Canola	nucleus	57.09	44.43
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	51.01	44.42
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.58	44.4
CDY04517	Canola	plastid	56.95	44.1
Bra011993.1-P	Field mustard	plastid	57.09	43.79
TraesCS2D01G176500.1	Wheat	golgi, unclear	61.13	43.68
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	59.78	42.93
KRH30536	Soybean	plastid	50.74	42.25
TraesCS7D01G351700.1	Wheat	cytosol	53.71	41.81
KRH25139	Soybean	plastid	54.12	41.73
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	56.14	41.73
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	55.2	39.9
TraesCS6D01G166300.1	Wheat	plastid	50.88	39.64
Solyc06g074730.2.1	Tomato	nucleus	53.71	39.37
TraesCS7D01G553000.1	Wheat	cytosol	54.52	39.19
TraesCS2D01G400200.1	Wheat	nucleus	56.82	38.31
TraesCS6D01G403900.1	Wheat	plastid	54.52	38.29
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	43.05	37.98
TraesCS1D01G151300.3	Wheat	plastid	43.18	37.69
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	55.87	37.2
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	56.95	34.88
TraesCS7D01G458800.1	Wheat	nucleus	21.59	34.33
Zm00001d039440_P001	Maize	cytosol	10.26	31.15
TraesCS5D01G169500.1	Wheat	cytosol	33.87	28.46
TraesCS7D01G520400.1	Wheat	nucleus	32.39	26.4
TraesCS1D01G453600.1	Wheat	nucleus	32.79	26.36
TraesCS3D01G191600.5	Wheat	nucleus	33.2	24.55
Zm00001d035554_P001	Maize	plastid	16.46	24.25
TraesCS2D01G417000.1	Wheat	nucleus	31.85	22.52
TraesCS2D01G412100.1	Wheat	plastid	33.47	22.2
TraesCS2D01G416500.1	Wheat	nucleus	28.21	19.77
TraesCS7D01G458900.1	Wheat	mitochondrion	1.21	4.95
Os03t0789500-01	Rice	cytosol	0.54	1.76

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5D01G454600	EnsemblPlants:TraesCS5D01G454600.1	TIGR:cd02846
TIGR:cd04657	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:501514024..501518860

Molecular Weight (calculated)

83854.3 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.295

Length

741 amino acids

Sequence
(BLAST)

001: MPQETIQVLD VVLRESPSWN YVTVSRSFFS TTFGHRGDIG EGLECWRGYY QSLRPTQMGL SLNIDISATS FFKPVTVVQF VLEFLNLRDA SRPLTDRDRV
101: KIKKALRGVR VETNHQEDQI RRYKITGITP VPMSQLIFPV DERGTRMSVV QYFMQRYKYN LQYTSWPCLQ SGSDARPVYL PMEACKIVEG QRYSKKLNDK
201: QVTNILRATR QRPQQREQSI REMVLHNKYA EDKFAQEFGI NVCSDLVSVP ARVLPPPMLS YHDSGKEKTC APSVGQWNMI NKKMINGGII DNWACVSFSR
301: IPPEEVHRFC CDLIQMCNMT GMSVNPRPLV DNRSANPNHI ENALRDVYRR TTEMLGKQGH EKQLQLLIVI LPEVSGSYGK IKKVCETDLG IVSQCCLPRH
401: AARPNKQYLE NVALKINVKV GGRNTVLERA FVRNGIPFVS EVPTIIFGAD VTHPPPGEDS ASSIAAVVAS MDWPEITKYR GLVSAQPHRQ EIIEDLFSVT
501: KDPQRGNVNG GMIRELLIAF RRKTGRRPER ILFYRDGVSE GQFSHVLLHE MDAIRKACAS LEEGYMPPVT FVVVQKRDHT RLFPDVHGRR DMTDKSGNIL
601: PGSVFELMTC HPTDFGFYLC NNTNIQGTSC NYHVLYDENN FTADALQSLT KKLCNTYARC VPGLSTVAPA FYAHVKARVC TRHYMEGDGS TGELNIKLLG
701: GGDKLVTDIL VLFPVCKCLS FFSMPSFNVI TVLQSGYWKA S

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.