Factsheet for TraesCS7B01G450300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G520400.1	Wheat	nucleus	87.16	88.12
TraesCS1B01G480100.1	Wheat	nucleus	78.89	78.21
TraesCS7B01G450200.2	Wheat	nucleus	77.15	76.57
Os04t0151800-02	Rice	nucleus	75.3	75.96
EES18816	Sorghum	nucleus	72.25	73.05
PGSC0003DMT400070806	Potato	nucleus	22.52	70.89
Zm00001d039214_P025	Maize	nucleus	71.16	70.78
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	68.55	66.74
GSMUA_Achr9P05150_001	Banana	nucleus	65.61	65.9
CDY72062	Canola	plastid	20.89	64.65
VIT_06s0009g01200.t01	Wine grape	nucleus	64.2	64.62
KRH73469	Soybean	nucleus	62.89	63.8
KRH14678	Soybean	nucleus	62.79	63.69
PGSC0003DMT400069459	Potato	nucleus	62.79	63.2
Solyc01g008960.2.1	Tomato	nucleus	62.24	62.93
Solyc06g073540.2.1	Tomato	nucleus	62.13	62.54
PGSC0003DMT400058471	Potato	nucleus	61.81	62.49
PGSC0003DMT400039204	Potato	cytosol	10.01	61.33
Solyc01g096750.1.1	Tomato	nucleus	58.54	61.07
KRG89867	Soybean	nucleus	62.57	60.72
VIT_08s0040g00070.t01	Wine grape	nucleus	60.5	60.57
Solyc06g073530.1.1	Tomato	nucleus	59.52	60.51
AT5G21150.1	Thale cress	nucleus	58.32	59.82
AT2G27040.1	Thale cress	nucleus	59.96	59.63
CDY56413	Canola	nucleus	59.85	59.59
CDY48192	Canola	nucleus	59.74	59.54
Bra034318.1-P	Field mustard	nucleus	59.63	59.44
CDY04475	Canola	nucleus	59.63	59.37
CDX77061	Canola	nucleus	59.41	59.22
Bra020152.1-P	Field mustard	nucleus	57.13	57.95
CDY09103	Canola	nucleus	57.02	57.84
CDX92417	Canola	nucleus	40.48	57.76
Bra002361.1-P	Field mustard	nucleus	56.04	56.53
AT5G21030.2	Thale cress	cytosol	52.45	56.44
VIT_13s0175g00140.t01	Wine grape	nucleus	53.75	55.82
CDX92405	Canola	nucleus	55.5	55.74
CDX92406	Canola	nucleus	54.62	55.53
CDY16587	Canola	nucleus	53.21	55.44
CDY59516	Canola	nucleus	54.3	55.08
TraesCS7B01G437700.1	Wheat	nucleus	52.45	54.84
TraesCS7B01G437900.1	Wheat	cytosol	47.99	54.65
TraesCS5B01G162300.1	Wheat	mitochondrion	52.56	53.79
Bra002360.1-P	Field mustard	nucleus	54.19	53.55
TraesCS7B01G373400.1	Wheat	nucleus	43.63	51.02
CDY16595	Canola	nucleus	49.84	49.78
KRH56276	Soybean	cytosol	43.96	48.62
Solyc03g111760.2.1	Tomato	mitochondrion	45.16	45.31
TraesCS3B01G027100.1	Wheat	cytosol	6.53	39.22
CDY62055	Canola	nucleus	24.16	38.54
TraesCS4B01G026600.1	Wheat	cytosol	18.5	35.05
TraesCS3B01G135800.1	Wheat	cytosol	30.58	33.41
TraesCS5B01G468000.1	Wheat	plastid	31.66	33.33
TraesCS7B01G256500.1	Wheat	cytosol	34.28	32.95
TraesCS3B01G287600.1	Wheat	nucleus	30.79	31.24
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	28.84	31.21
TraesCS5B01G454200.1	Wheat	cytosol	22.85	31.11
TraesCS6B01G206700.1	Wheat	plastid	31.99	31.01
TraesCS6B01G466700.1	Wheat	nucleus	34.06	30.9
TraesCS7B01G482100.1	Wheat	nucleus	34.06	30.33
TraesCS4B01G024000.1	Wheat	nucleus	32.86	29.49
TraesCS5B01G452500.1	Wheat	nucleus	28.94	29.17
TraesCS2B01G421000.2	Wheat	nucleus	34.93	29.13
TraesCS6B01G270900.1	Wheat	nucleus	34.39	29.12
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	31.12	29.04
TraesCS5B01G451400.2	Wheat	plastid	33.3	28.87
TraesCS2B01G195200.2	Wheat	nucleus	31.23	28.47
Bra002349.1-P	Field mustard	nucleus	52.67	28.45
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	22.09	25.28
TraesCS2B01G439000.2	Wheat	nucleus, unclear	27.31	24.0
TraesCS5B01G458100.1	Wheat	cytosol	24.37	23.58
TraesCS2B01G434000.1	Wheat	nucleus	25.35	22.19
TraesCS2B01G438200.1	Wheat	nucleus	23.83	20.49

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7B01G450300	EnsemblPlants:TraesCS7B01G450300.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:712240052..712250408

Molecular Weight (calculated)

102714.0 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.372

Length

919 amino acids

Sequence
(BLAST)

001: MDPSDRGPDE LPPPPPLPPD VVPIKAEEDV AEEPPPNKPS KPKRLPMARP GLGKRGHTIQ LLANHYKVSF KGSEEFFYHY HVNLKYEDDQ PVVEKGIGRK
101: VQDKLLQMYH SDLANKDFAY DGEKSLFTIG ALPQVHNEFT VVLEDIGSGK SSGGNSGNSP EGSDTKRVRR PYQSKIIKVE LSFAAKIPMA AIAQAIRGEE
201: SENSLEAIRV LDIILRQHFA KQYSANHFFH NNPKSFIDLG GGLLGCQGFH SSFRGAQSGL SLNIDVSTTM IVKPGPVVDF LLANQMVRRT DEINWPKAKR
301: TLKSLRIKTT HTNSEFKIIG LTEKNCNKQT FPLRRRNGDN GDTDTVEITV YDYFIQNRGI ELRYSGNLPC INAGRPNRPT YFPVELCTLV PLQRYTKALS
401: TLQRSSLVEK SRQKPHQRMS TLDDVSYHLL PSSSYAKCMA LKRSNYDSDP MLKACGISIA RNLTQIEGRI LQAPKLKAGD GEEFIPQKGR WTLARKKLIR
501: TGSVMRWAVV NFSARCDARG LVRELTRIAI AMGIKIEDPH DVIEESPSVR RAPTLRRVDE MFAQLKSKLP GQPKFLLCLL PASPWKRKCL AEVGIFTQCL
601: APPPRVNDQY LINVLLKINA KLDGLNTLLQ GELPPAPAVL PIVGKVPTII LGMDVSHGQP GQSDRPSIAA VVNSREWPLI SKYRATVHTQ SPKLETMSSL
701: FKPRGTEDDG LIWESLIDFY TSSENRKPDQ VIIFRDGVSE SQFTDVINIE LEQIIQACKF LDEKWEPKFT VIVAQKNHHT RFFQTGCPDN VSPGTVVDKE
801: VCHPKNFDFY MCAHAGMIGT SRPTHYHVLH DEIGFTADEL QEFVHSLSYV YQRSTTAISV VAPIMYAHLA AAQVGTFVRF EDMSDVSSSQ GGGHTSAGSI
901: PVPELPRLHK NVRSSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.