Factsheet for TraesCS4B01G026600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G027100.1	Wheat	cytosol	18.76	59.48
TraesCS4D01G024100.1	Wheat	plastid	94.64	53.56
TraesCS5B01G468000.1	Wheat	plastid	96.29	53.49
TraesCS4A01G288300.1	Wheat	plastid	92.58	52.39
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	32.16	43.45
TraesCS4B01G024000.1	Wheat	nucleus	74.23	35.16
CDX71410	Canola	nucleus	65.36	33.3
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	58.35	33.26
TraesCS3B01G287600.1	Wheat	nucleus	62.06	33.22
CDY04517	Canola	plastid	65.15	33.02
Bra011993.1-P	Field mustard	plastid	65.15	32.71
TraesCS7B01G256500.1	Wheat	cytosol	64.12	32.53
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	67.22	31.59
KRH25139	Soybean	plastid	61.86	31.22
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	63.92	31.09
TraesCS6B01G206700.1	Wheat	plastid	60.41	30.91
TraesCS6B01G466700.1	Wheat	nucleus	63.92	30.6
TraesCS5B01G452500.1	Wheat	nucleus	57.53	30.59
TraesCS7B01G482100.1	Wheat	nucleus	64.95	30.52
TraesCS5B01G451400.2	Wheat	plastid	66.6	30.47
TraesCS5B01G458100.1	Wheat	cytosol	59.18	30.21
TraesCS2B01G195200.2	Wheat	nucleus	62.06	29.86
Solyc06g074730.2.1	Tomato	nucleus	61.86	29.67
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	62.47	29.56
KRH30536	Soybean	plastid	54.23	29.55
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	50.93	29.09
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	58.56	28.83
TraesCS6B01G270900.1	Wheat	nucleus	64.33	28.76
TraesCS2B01G421000.2	Wheat	nucleus	64.74	28.49
TraesCS5B01G454200.1	Wheat	cytosol	39.18	28.15
TraesCS3B01G135800.1	Wheat	cytosol	48.45	27.94
GSMUA_Achr6P04510_001	Banana	nucleus	69.69	27.32
TraesCS7B01G437900.1	Wheat	cytosol	34.85	20.94
TraesCS5B01G162300.1	Wheat	mitochondrion	38.14	20.6
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	33.81	20.42
TraesCS2B01G434000.1	Wheat	nucleus	43.3	20.0
TraesCS7B01G437700.1	Wheat	nucleus	35.46	19.57
TraesCS1B01G480100.1	Wheat	nucleus	36.7	19.2
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	37.32	19.17
TraesCS7B01G450300.1	Wheat	nucleus	35.05	18.5
TraesCS7B01G450200.2	Wheat	nucleus	34.85	18.25
TraesCS2B01G439000.2	Wheat	nucleus, unclear	37.94	17.59
TraesCS2B01G438200.1	Wheat	nucleus	34.23	15.53
TraesCS7B01G373400.1	Wheat	nucleus	22.47	13.87
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS4B01G026600.1	EnsemblPlantsGene:TraesCS4B01G026600	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Argonaute_Mid_dom	InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	PFAM:PF02171	PFAM:PF16487	PFscan:PS50822
SMART:SM00950	SUPFAM:SSF53098	TIGR:cd04657	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4B:-:20005649..20008978

Molecular Weight (calculated)

54385.8 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.209

Length

485 amino acids

Sequence
(BLAST)

001: MKVMNQLALV DARVLPAPRL KYHESGREKV CNPSVGQWNM INKRMVNGGS INHWACLTFA SRLHPNDIGM FCRDLAHMCN SIGMEMNMEP CVNITQARRQ
101: DTVESAIRNI HRHSAEVLTK QGLEGKQLEL LIIILPDISG SYGKIKRLCE TELGVITQCC LPKNVQKGGK QYLENLSLKI NVKVGGRNTV LEDALYKRIP
201: LLTDVPTIVF GADVTHPAAG EDASPSIAAV VASMDWPEVT KYKCLVSSQG PREEIIADLY TETMDPQRGR VGGGMIRELL LSFYRATGCK PHRIIFYIDG
301: VSEGQFSQVL LYEMDAIRKA CATLQAGYLP PVSFVVVQKR HHTRLFPENH RARDLTDRSG NILPGTVVDT KICHPTEFDF YLCSHAGIRG TSRPTHYHVL
401: LDENRFSADA LQTLTYNLCY TYARCTRSVS IVPPAYYAHL AAFRARYYMQ DEFSDGGSSS ATARLAPTRQ LPKIRDSVKE FMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.