Factsheet for TraesCS3B01G217300.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, unclear
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G188400.1	Wheat	nucleus	96.19	99.13
HORVU3Hr1G038830.1	Barley	nucleus	94.17	96.42
TraesCS3D01G191600.5	Wheat	nucleus	98.31	92.61
Os01t0275600-01	Rice	nucleus	83.16	86.84
Zm00001d040429_P012	Maize	nucleus	79.98	83.8
OQU86696	Sorghum	nucleus	79.34	83.22
Zm00001d008249_P012	Maize	nucleus	79.13	83.0
TraesCS1B01G480100.1	Wheat	nucleus	73.31	74.65
PGSC0003DMT400070806	Potato	nucleus	22.88	73.97
GSMUA_Achr9P05150_001	Banana	nucleus	69.6	71.8
VIT_06s0009g01200.t01	Wine grape	nucleus	68.86	71.19
Solyc01g008960.2.1	Tomato	nucleus	67.58	70.19
KRH14678	Soybean	nucleus	67.27	70.09
PGSC0003DMT400058471	Potato	nucleus	67.37	69.97
KRH73469	Soybean	nucleus	66.74	69.54
TraesCS7B01G450300.1	Wheat	nucleus	66.74	68.55
Solyc06g073540.2.1	Tomato	nucleus	66.0	68.24
PGSC0003DMT400069459	Potato	nucleus	66.0	68.24
CDY72062	Canola	plastid	21.4	68.01
Solyc01g096750.1.1	Tomato	nucleus	63.14	67.65
VIT_08s0040g00070.t01	Wine grape	nucleus	65.25	67.1
TraesCS7B01G450200.2	Wheat	nucleus	64.72	65.98
KRG89867	Soybean	nucleus	66.0	65.79
CDY48192	Canola	nucleus	63.03	64.53
AT2G27040.1	Thale cress	nucleus	63.14	64.5
CDY56413	Canola	nucleus	63.03	64.46
CDY04475	Canola	nucleus	63.03	64.46
Bra020152.1-P	Field mustard	nucleus	61.86	64.46
Bra034318.1-P	Field mustard	nucleus	62.92	64.43
CDX77061	Canola	nucleus	62.92	64.43
AT5G21150.1	Thale cress	nucleus	61.12	64.4
CDY09103	Canola	nucleus	61.76	64.35
Solyc06g073530.1.1	Tomato	nucleus	61.55	64.27
CDX92417	Canola	nucleus	43.11	63.2
VIT_13s0175g00140.t01	Wine grape	nucleus	58.69	62.6
Bra002361.1-P	Field mustard	nucleus	60.17	62.35
CDX92405	Canola	nucleus	59.53	61.42
CDX92406	Canola	nucleus	57.73	60.29
CDY16587	Canola	nucleus	56.04	59.98
AT5G21030.2	Thale cress	cytosol	54.24	59.95
CDY59516	Canola	nucleus	57.52	59.93
TraesCS7B01G437900.1	Wheat	cytosol	50.53	59.11
TraesCS7B01G437700.1	Wheat	nucleus	54.66	58.7
TraesCS5B01G162300.1	Wheat	mitochondrion	55.72	58.57
Bra002360.1-P	Field mustard	nucleus	57.42	58.28
PGSC0003DMT400039204	Potato	cytosol	9.22	58.0
CDY16595	Canola	nucleus	52.97	54.35
TraesCS7B01G373400.1	Wheat	nucleus	45.02	54.07
KRH56276	Soybean	cytosol	47.46	53.91
Solyc03g111760.2.1	Tomato	mitochondrion	45.44	46.83
CDY62055	Canola	nucleus	26.38	43.23
TraesCS3B01G027100.1	Wheat	cytosol	6.25	38.56
TraesCS4B01G026600.1	Wheat	cytosol	19.17	37.32
TraesCS3B01G135800.1	Wheat	cytosol	31.36	35.2
TraesCS5B01G468000.1	Wheat	plastid	32.2	34.82
TraesCS7B01G256500.1	Wheat	cytosol	34.22	33.79
TraesCS5B01G454200.1	Wheat	cytosol	23.41	32.74
TraesCS3B01G287600.1	Wheat	nucleus	30.93	32.23
TraesCS6B01G206700.1	Wheat	plastid	32.31	32.17
TraesCS6B01G466700.1	Wheat	nucleus	34.32	31.98
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	27.97	31.1
Bra002349.1-P	Field mustard	nucleus	55.19	30.63
TraesCS7B01G482100.1	Wheat	nucleus	33.26	30.43
TraesCS5B01G452500.1	Wheat	nucleus	29.34	30.37
TraesCS6B01G270900.1	Wheat	nucleus	34.64	30.14
TraesCS4B01G024000.1	Wheat	nucleus	32.63	30.08
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	31.36	30.05
TraesCS2B01G421000.2	Wheat	nucleus	34.85	29.85
TraesCS5B01G451400.2	Wheat	plastid	33.37	29.72
TraesCS2B01G195200.2	Wheat	nucleus	30.93	28.97
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	22.35	26.28
TraesCS2B01G439000.2	Wheat	nucleus, unclear	27.01	24.38
TraesCS5B01G458100.1	Wheat	cytosol	24.47	24.32
TraesCS2B01G434000.1	Wheat	nucleus	27.01	24.29
TraesCS2B01G438200.1	Wheat	nucleus	22.99	20.3

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3B01G217300	EnsemblPlants:TraesCS3B01G217300.2	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:259455923..259462435

Molecular Weight (calculated)

104742.0 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.352

Length

944 amino acids

Sequence
(BLAST)

001: MTDLTCLCAA DQFSGSAPPD HCGFAEMESQ GDDLPPPPPL PPNAEPIKAE SADDLPLPPP LPPIKPEEAK KISKPKRALI ARPGFGKRGN PIQLVTNHFK
101: VSLKTTDEFF HHYYVNLKYE DDRPVDGKGV GRKVIDKLSQ TYASELAHKD FAYDGEKSLF TIGALPQINN EFVVVLEDVS SGKTPANGSP GNDSPGNDKK
201: RVKRPYQTKT FKVELSFAAR IPMSAIAMAL KGQESEHTQE AIRVIDIILR QHSAKQGCLL VRQSFFHNNP SNFVDLGGGV MGCRGFHSSF RATQSGLSLN
301: IDVSTTMIVK PGPVVDFLLA NQKVDHPNKI DWAKAKRALK NLRIKTSPAN TEYKIVGLSE RNCYEQMFSL KQRNGGNGDP EAIEISVYDY FVKNRGIELR
401: YSGDFPCINV GKPRRPTYFP IELCQLVPLQ RYTKSLSTLQ RSSLVEKSRQ KPQERMSVLS DVLKRSSYDT EPMLKACGIS IAQGFTQVSG RVLQAPKLKA
501: GNGEDIFTRN GRWNFNNKRL ARACVVDRWA VVNFSARCNT MNLVNDLIKC GGMKGITVEK PHIVIEENGS MRRAPAPKRV EDMFEQVKSK LPGAPKFLLC
601: ILAERKNSDV YGPWKRKCLA DFGIVTQCVA PTRVNDQYLT NVLLKINAKL GGMNSLLQIE MSPSIPLVSK VPTLILGMDV SHGSPGQSDI PSIAAVVGSR
701: EWPLVSKYRA SVRSQSPKLE MIDSLFKPQG TDDDGLVREC LIDFYTSSGK RKPDQIIIFR DGVSESQFNQ VLNIELDQII EACKFLDENW NPKFTLIVAQ
801: KNHHTKFFIP GSPENVPPGT VVDNAVCHPR NYDFYMCAHA GMIGTTRPTH YHILHDEIHF AADDLQDLVH SLSYVYQRST TAISVVSPIC YAHLAAAQVA
901: QFIKFDEMSE TSSSQGGGHT SAGSAPVQEL PRLHEKVRSS MFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.