Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010719_P002 | |
| Zm00001d038644_P004 | |
| Zm00001d053872_P021 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | Zm00001d053872_P021 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | Zm00001d010719_P002 | AT5G04290.1 | 19410546 |
| AT2G27040.1 | Zm00001d038644_P004 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040429_P012 | Maize | nucleus | 95.56 | 95.45 |
| OQU86696 | Sorghum | nucleus | 95.33 | 95.33 |
| Os01t0275600-01 | Rice | nucleus | 83.33 | 82.96 |
| TraesCS3A01G188400.1 | Wheat | nucleus | 82.89 | 81.44 |
| HORVU3Hr1G038830.1 | Barley | nucleus | 82.78 | 80.8 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 83.0 | 79.13 |
| TraesCS3D01G191600.5 | Wheat | nucleus | 82.89 | 74.45 |
| PGSC0003DMT400070806 | Potato | nucleus | 23.89 | 73.63 |
| Zm00001d039214_P025 | Maize | nucleus | 74.89 | 72.94 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 73.33 | 72.13 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 72.56 | 71.52 |
| KRH14678 | Soybean | nucleus | 71.56 | 71.08 |
| Solyc01g008960.2.1 | Tomato | nucleus | 71.78 | 71.07 |
| PGSC0003DMT400058471 | Potato | nucleus | 71.33 | 70.63 |
| KRH73469 | Soybean | nucleus | 71.0 | 70.53 |
| Solyc06g073540.2.1 | Tomato | nucleus | 70.33 | 69.33 |
| PGSC0003DMT400069459 | Potato | nucleus | 70.11 | 69.11 |
| CDY72062 | Canola | plastid | 22.67 | 68.69 |
| Solyc01g096750.1.1 | Tomato | nucleus | 66.22 | 67.65 |
| VIT_08s0040g00070.t01 | Wine grape | nucleus | 68.56 | 67.21 |
| KRG89867 | Soybean | nucleus | 70.11 | 66.63 |
| CDX77061 | Canola | nucleus | 67.22 | 65.62 |
| CDY48192 | Canola | nucleus | 67.22 | 65.62 |
| Bra034318.1-P | Field mustard | nucleus | 67.11 | 65.51 |
| AT2G27040.1 | Thale cress | nucleus | 67.11 | 65.37 |
| CDY56413 | Canola | nucleus | 67.0 | 65.33 |
| CDY04475 | Canola | nucleus | 67.0 | 65.33 |
| Solyc06g073530.1.1 | Tomato | nucleus | 64.89 | 64.6 |
| Bra020152.1-P | Field mustard | nucleus | 64.56 | 64.13 |
| CDY09103 | Canola | nucleus | 64.44 | 64.02 |
| AT5G21150.1 | Thale cress | nucleus | 63.33 | 63.62 |
| CDX92417 | Canola | nucleus | 45.33 | 63.35 |
| Bra002361.1-P | Field mustard | nucleus | 62.22 | 61.47 |
| VIT_13s0175g00140.t01 | Wine grape | nucleus | 59.78 | 60.79 |
| CDX92405 | Canola | nucleus | 61.56 | 60.55 |
| CDY16587 | Canola | nucleus | 58.78 | 59.98 |
| CDX92406 | Canola | nucleus | 60.0 | 59.73 |
| AT5G21030.2 | Thale cress | cytosol | 56.56 | 59.6 |
| CDY59516 | Canola | nucleus | 59.89 | 59.49 |
| PGSC0003DMT400039204 | Potato | cytosol | 9.78 | 58.67 |
| Bra002360.1-P | Field mustard | nucleus | 59.67 | 57.74 |
| Zm00001d019905_P003 | Maize | nucleus | 58.22 | 56.89 |
| KRH56276 | Soybean | cytosol | 50.56 | 54.75 |
| CDY16595 | Canola | nucleus | 55.44 | 54.24 |
| Solyc03g111760.2.1 | Tomato | mitochondrion | 47.78 | 46.94 |
| Zm00001d015926_P001 | Maize | nucleus | 11.22 | 44.89 |
| CDY62055 | Canola | nucleus | 28.11 | 43.92 |
| Zm00001d005045_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 10.0 | 38.96 |
| Zm00001d018436_P001 | Maize | cytosol | 5.11 | 37.7 |
| Zm00001d026146_P001 | Maize | nucleus | 6.0 | 36.99 |
| Zm00001d032611_P002 | Maize | vacuole | 14.67 | 35.48 |
| Zm00001d025691_P001 | Maize | mitochondrion | 7.56 | 34.87 |
| Zm00001d025073_P001 | Maize | cytosol | 14.11 | 32.73 |
| Zm00001d036917_P009 | Maize | nucleus | 35.0 | 32.61 |
| Zm00001d044183_P001 | Maize | cytosol | 6.56 | 32.6 |
| Zm00001d009158_P003 | Maize | golgi | 15.78 | 32.49 |
| Zm00001d025331_P002 | Maize | cytosol | 19.78 | 32.25 |
| Zm00001d037833_P001 | Maize | mitochondrion | 8.56 | 31.05 |
| Zm00001d046438_P003 | Maize | cytosol | 34.67 | 31.04 |
| Bra002349.1-P | Field mustard | nucleus | 57.44 | 30.39 |
| Zm00001d036886_P001 | Maize | plastid | 7.56 | 30.09 |
| Zm00001d021345_P001 | Maize | nucleus | 30.33 | 29.39 |
| Zm00001d026300_P001 | Maize | nucleus | 28.67 | 29.28 |
| Zm00001d002316_P003 | Maize | plastid | 27.78 | 29.21 |
| Zm00001d013542_P003 | Maize | nucleus | 34.22 | 29.19 |
| Zm00001d026111_P014 | Maize | nucleus | 34.89 | 28.68 |
| Zm00001d007786_P001 | Maize | nucleus | 32.78 | 28.59 |
| Zm00001d011096_P059 | Maize | nucleus | 35.11 | 28.52 |
| Zm00001d002650_P003 | Maize | nucleus | 35.56 | 28.42 |
| Zm00001d013063_P001 | Maize | nucleus | 31.11 | 27.72 |
| Zm00001d035747_P027 | Maize | endoplasmic reticulum, plastid | 34.89 | 27.33 |
| Zm00001d014875_P001 | Maize | nucleus | 32.33 | 26.97 |
| Zm00001d006351_P001 | Maize | nucleus | 31.33 | 26.78 |
| Zm00001d039440_P001 | Maize | cytosol | 7.11 | 26.23 |
| Zm00001d033206_P001 | Maize | cytosol | 28.11 | 26.19 |
| Zm00001d033518_P001 | Maize | nucleus | 32.67 | 24.77 |
| Zm00001d029573_P001 | Maize | cytosol | 28.22 | 24.61 |
| Zm00001d035554_P001 | Maize | plastid | 12.56 | 22.47 |
Protein Annotations
| EntrezGene:100381552 | MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | UniProt:A0A1D6FB88 |
| ProteinID:AQK89310.1 | InterPro:ArgoL1 | InterPro:ArgoL2 | InterPro:Argonaute_N | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 |
| InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 |
| PFAM:PF02171 | PFAM:PF08699 | PFAM:PF16486 | PFAM:PF16488 | PFscan:PS50821 | PFscan:PS50822 |
| PANTHER:PTHR22891 | PANTHER:PTHR22891:SF56 | InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 |
| SMART:SM01163 | SUPFAM:SSF101690 | SUPFAM:SSF53098 | UniParc:UPI0008429CCC | EnsemblPlantsGene:Zm00001d008249 | EnsemblPlants:Zm00001d008249_P012 |
| EnsemblPlants:Zm00001d008249_T012 | SEG:seg | : | : | : | : |
Description
argonaute4a argonaute4a
Coordinates
chr8:+:2667421..2674754
Molecular Weight (calculated)
100726.0 Da
IEP (calculated)
9.386
GRAVY (calculated)
-0.371
Length
900 amino acids
Sequence
(BLAST)
(BLAST)
001: MESHNGEADD LPPPPPLAAG VEPLKADETK MPLKPRSLVQ RNGFGRKGQQ IKLITNHFKV SLMKAEDFFY HYYVNLKYED DTPVDRKGSG RKVIEKLQQT
101: YAAELANKDF AYDGEKSLFT IGALPQVKME FTVVDEDVST GKTPANGSPG NDSPPGSDRK RVRRPYNTKT YKVELSFAAK IPMSAISQAL RGQESEHTQE
201: AIRVIDIILR QHSAKQGCLL VRQSFFHNNP SNFVDLGGGV VGCRGFHSSF RATQSGLSLN IDVSTTMIVK PGPVIDFLIA NQKVNDPSMI DWAKAKRSLK
301: NLRIKTSPAN QEQKIVGLSD RPCREQLFTL KHKNGESEEI TVFDYFVKNR GIKLEYSGDL PCINVGKPKR PTYFPVELCS LLPLQRYTKA LSTLQRSSLV
401: EKSRQKPQER MSVLSDVLQR SNYDAEPMLK ACGITIARNF IEVDGRVLQP PKLKAGNGED IFTRNGRWNF NNKKLIRASS VEKWAVVNFS ARCNVRDLVR
501: DLIKCGGMKG IMVDAPFAVF DENPSMRRSP AVRRVEDMFE QVKTKLPGAP KFLLCVLAER KNSDIYGPWK KKCLAEFGIV TQCVAPTRVN DQYLTNVLLK
601: INAKLGGLNS LLQIETSPAI PLVSKVPTII LGMDVSHGSP GHSDIPSVAA VVSSREWPLI SKYRASVRTQ SPKMEMIDSL FKPRETDDDG LIRECLIDFY
701: TSSGKRKPDQ VIIFRDGVSE SQFNQVLNIE LQQIIEACKF LDEKWNPKFT LIIAQKNHHT KFFIPGKPDN VPAGTVVDNK VCHPRNFDFY MCSHAGMIVS
801: GTTRPTHYHI LHDEIGFNPD DLQELVHSLS YVYQRSTTAI SVVAPICYAH LAAAQVGQFI KFDEMSETSS SHGGHTSAGS VPVQELPRLH EKVRSSMFFC
101: YAAELANKDF AYDGEKSLFT IGALPQVKME FTVVDEDVST GKTPANGSPG NDSPPGSDRK RVRRPYNTKT YKVELSFAAK IPMSAISQAL RGQESEHTQE
201: AIRVIDIILR QHSAKQGCLL VRQSFFHNNP SNFVDLGGGV VGCRGFHSSF RATQSGLSLN IDVSTTMIVK PGPVIDFLIA NQKVNDPSMI DWAKAKRSLK
301: NLRIKTSPAN QEQKIVGLSD RPCREQLFTL KHKNGESEEI TVFDYFVKNR GIKLEYSGDL PCINVGKPKR PTYFPVELCS LLPLQRYTKA LSTLQRSSLV
401: EKSRQKPQER MSVLSDVLQR SNYDAEPMLK ACGITIARNF IEVDGRVLQP PKLKAGNGED IFTRNGRWNF NNKKLIRASS VEKWAVVNFS ARCNVRDLVR
501: DLIKCGGMKG IMVDAPFAVF DENPSMRRSP AVRRVEDMFE QVKTKLPGAP KFLLCVLAER KNSDIYGPWK KKCLAEFGIV TQCVAPTRVN DQYLTNVLLK
601: INAKLGGLNS LLQIETSPAI PLVSKVPTII LGMDVSHGSP GHSDIPSVAA VVSSREWPLI SKYRASVRTQ SPKMEMIDSL FKPRETDDDG LIRECLIDFY
701: TSSGKRKPDQ VIIFRDGVSE SQFNQVLNIE LQQIIEACKF LDEKWNPKFT LIIAQKNHHT KFFIPGKPDN VPAGTVVDNK VCHPRNFDFY MCSHAGMIVS
801: GTTRPTHYHI LHDEIGFNPD DLQELVHSLS YVYQRSTTAI SVVAPICYAH LAAAQVGQFI KFDEMSETSS SHGGHTSAGS VPVQELPRLH EKVRSSMFFC
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.