Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008249_P012 | |
| Zm00001d039214_P025 | |
| Zm00001d040429_P012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | Zm00001d008249_P012 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Zm00001d039214_P025 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Zm00001d040429_P012 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78267 | Sorghum | nucleus | 59.79 | 60.47 |
| Zm00001d010719_P002 | Maize | nucleus | 56.25 | 56.85 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.29 | 55.65 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.02 | 48.42 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.41 | 44.94 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 38.84 | 44.8 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 42.32 | 44.02 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 16.97 | 43.96 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 41.21 | 42.2 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 40.83 | 41.19 |
| Os05t0506200-01 | Rice | nucleus | 13.24 | 36.35 |
| CDY41384 | Canola | nucleus | 15.48 | 32.98 |
| CDX70245 | Canola | nucleus | 18.96 | 27.04 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.16 | 26.69 |
| KRH35991 | Soybean | nucleus | 23.68 | 26.24 |
| KRG90770 | Soybean | nucleus | 23.8 | 25.62 |
| Zm00001d037142_P001 | Maize | cytosol | 16.03 | 24.81 |
| Solyc11g008150.1.1 | Tomato | nucleus | 22.62 | 24.12 |
| Bra009470.1-P | Field mustard | nucleus | 22.5 | 23.46 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 15.54 | 23.19 |
| AT5G04290.1 | Thale cress | nucleus | 21.07 | 22.71 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 0.87 | 9.59 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 0.56 | 7.44 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:A0A1D6M7N5 | ProteinID:AQK87070.1 | GO:GO:0005575 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom_sf |
| PFAM:PF03439 | PFAM:PF11942 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 |
| InterPro:Spt5_N | InterPro:TF_Spt5_NGN-domain | UniParc:UPI000844B320 | EnsemblPlantsGene:Zm00001d038644 | EnsemblPlants:Zm00001d038644_P004 | EnsemblPlants:Zm00001d038644_T004 |
| SEG:seg | : | : | : | : | : |
Description
Protein RNA-directed DNA methylation 3
Coordinates
chr6:+:161622743..161636125
Molecular Weight (calculated)
172157.0 Da
IEP (calculated)
5.306
GRAVY (calculated)
-1.020
Length
1609 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVKGKGKQV APESPGPGGG GASGAGGKRR KASGDTGEGP SSSSAAKRRR RAGVLQFVDD VAGVDDDNED EDEDELESED DPDDGFFTGG EHAEKLSHKR
0101: TERSHPLPFL VKEEELSGDE LEEFIKNRYS NRVKYAADRS YSREDDDIFP MDCALKEPTI WRVKCMVGRE RQMAFCFMQK FVDLRKIGTK VPIITAFALD
0201: HIRGFVFVEA EKAGYVTEAC KGFCSVYTSR ITSVPATEVP SLLSSRTKPF EISRGTWIRM KNGNYKGDLA QVVNMDSGRK KVMIKIIPRV DLHAISKKFG
0301: GAVSLKEAAV PAPRLISSQE LEFFRPHIEI KRDRQTGEVF EVLDGLMFKD GFLYKKVALS SLIYWGIQPT ETELLKFSSS PSNRASADDL DWLSGMYGSK
0401: KRNLPAERDM KSSSSKIKSS KAPDLKGSTS TENYDDNDEF NLHDLVLYGR KDFGVIIAVE KDGFRILKGG PEGSAVTVRK QDIKKGCVDK MFTAVDHHKK
0501: TISINDTVNV VEGPFQGKQG LVKHLYLGIL FIFNESESEN CGFFCAQSGS CEKIRKGLGS STTENSDFPT PMFSEPAYEQ NEHRNTEGPY RSTREQLFSI
0601: GQMLRIRKGP LKGYLCRVVR IFRNDVTVKL DSLLKIVTVQ ADLLSVPANR GDNLSGAPAS KFGSQDTPFF GSEAGKTSWD RGLPSFGSDS WQPFSSSTLP
0701: VQNAAGCGTC TFSGAESEAD PWCKKTSAED DSDPWGKKTD GDSDPWGKEA VSAADGDCNP WGKETVPSAA GDSDPWGKKV FSADGDSDPW GKKAISSAVE
0801: VWNTSATQKE GSSGNAWDKQ AGVGGSDAAG SSWDRAVVNK ESEKSDNWGE ACRVMDMGTG ADTDPWGSKV KAVDMEGPNS WEKATMPPDN KLEDVSQGWN
0901: QHKGNSTEDQ AKDNVSKDED NNRAWSSSLP VTEDGTWGKS KDDNCDGAGG AGGWDASVAN WNKSSVLADA QDEGWGKGNW SSAKSEETNN EIGNWNKAGA
1001: SDQAGPKSFG GDGWNKGGDQ NSSWNSPGNF GGGRGFGRGR GRVRGRESGD FNGRNDQGNW KNSWGGDNAE KSSWRSDNQV DNEAGDSGGY RGRGRGGRGQ
1101: YGGRGRGRDN GWRNGDGPKW GGGDNWNATN PPSNQPWSSS GGTKSYGQNQ PSTWNNPEDN KPSVGEQGDP WASKVSSTEG KGQQNDSWSS KMTSRGAEDT
1201: SGGWDSKEKG SSCNGGGEGL QNDPWANKIG SNEGKEQEAD PWASKMSSAV GADDKNGTWD TTTKGTLSNE KADDPWNSKR GNDDDSKKTD AWGAGSSGGN
1301: QESSWSKPIF SLGDQEPTWN NPRFGDDDNV NNRGGFGRGN QGRGRGRSFG GGGGGSSWNE SNKNGESGGG RSGEPWNRRG FDGGRGRGRF GRGDRNQGNN
1401: LGSGDGGSWG SGRGNGGGRG GYRNWNDNNE RRPFGQGGGW SQSSDWNANK GSGEGNQAFS KSKPSWDAQN ASGGDDQAGK KSDTDNSWSQ NRSSPSILGQ
1501: PSGDANNKSS AWDGAPNGGA GRGGSGSWGK SDEDGWNSSS GGSAREKPSW GGGAEAPPRK EDDGAWGKGG EGSRSLGGGG EGGSSSSWDK PADGAWSGNN
1601: KGGSGSGGW
0101: TERSHPLPFL VKEEELSGDE LEEFIKNRYS NRVKYAADRS YSREDDDIFP MDCALKEPTI WRVKCMVGRE RQMAFCFMQK FVDLRKIGTK VPIITAFALD
0201: HIRGFVFVEA EKAGYVTEAC KGFCSVYTSR ITSVPATEVP SLLSSRTKPF EISRGTWIRM KNGNYKGDLA QVVNMDSGRK KVMIKIIPRV DLHAISKKFG
0301: GAVSLKEAAV PAPRLISSQE LEFFRPHIEI KRDRQTGEVF EVLDGLMFKD GFLYKKVALS SLIYWGIQPT ETELLKFSSS PSNRASADDL DWLSGMYGSK
0401: KRNLPAERDM KSSSSKIKSS KAPDLKGSTS TENYDDNDEF NLHDLVLYGR KDFGVIIAVE KDGFRILKGG PEGSAVTVRK QDIKKGCVDK MFTAVDHHKK
0501: TISINDTVNV VEGPFQGKQG LVKHLYLGIL FIFNESESEN CGFFCAQSGS CEKIRKGLGS STTENSDFPT PMFSEPAYEQ NEHRNTEGPY RSTREQLFSI
0601: GQMLRIRKGP LKGYLCRVVR IFRNDVTVKL DSLLKIVTVQ ADLLSVPANR GDNLSGAPAS KFGSQDTPFF GSEAGKTSWD RGLPSFGSDS WQPFSSSTLP
0701: VQNAAGCGTC TFSGAESEAD PWCKKTSAED DSDPWGKKTD GDSDPWGKEA VSAADGDCNP WGKETVPSAA GDSDPWGKKV FSADGDSDPW GKKAISSAVE
0801: VWNTSATQKE GSSGNAWDKQ AGVGGSDAAG SSWDRAVVNK ESEKSDNWGE ACRVMDMGTG ADTDPWGSKV KAVDMEGPNS WEKATMPPDN KLEDVSQGWN
0901: QHKGNSTEDQ AKDNVSKDED NNRAWSSSLP VTEDGTWGKS KDDNCDGAGG AGGWDASVAN WNKSSVLADA QDEGWGKGNW SSAKSEETNN EIGNWNKAGA
1001: SDQAGPKSFG GDGWNKGGDQ NSSWNSPGNF GGGRGFGRGR GRVRGRESGD FNGRNDQGNW KNSWGGDNAE KSSWRSDNQV DNEAGDSGGY RGRGRGGRGQ
1101: YGGRGRGRDN GWRNGDGPKW GGGDNWNATN PPSNQPWSSS GGTKSYGQNQ PSTWNNPEDN KPSVGEQGDP WASKVSSTEG KGQQNDSWSS KMTSRGAEDT
1201: SGGWDSKEKG SSCNGGGEGL QNDPWANKIG SNEGKEQEAD PWASKMSSAV GADDKNGTWD TTTKGTLSNE KADDPWNSKR GNDDDSKKTD AWGAGSSGGN
1301: QESSWSKPIF SLGDQEPTWN NPRFGDDDNV NNRGGFGRGN QGRGRGRSFG GGGGGSSWNE SNKNGESGGG RSGEPWNRRG FDGGRGRGRF GRGDRNQGNN
1401: LGSGDGGSWG SGRGNGGGRG GYRNWNDNNE RRPFGQGGGW SQSSDWNANK GSGEGNQAFS KSKPSWDAQN ASGGDDQAGK KSDTDNSWSQ NRSSPSILGQ
1501: PSGDANNKSS AWDGAPNGGA GRGGSGSWGK SDEDGWNSSS GGSAREKPSW GGGAEAPPRK EDDGAWGKGG EGSRSLGGGG EGGSSSSWDK PADGAWSGNN
1601: KGGSGSGGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.