Factsheet for Zm00001d037142_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047048_P001	Maize	cytosol, mitochondrion, peroxisome	13.27	94.52
EER88041	Sorghum	nucleus	92.79	91.9
TraesCS7D01G169200.1	Wheat	cytosol	88.08	87.07
Os06t0208300-01	Rice	cytosol	24.33	86.94
TraesCS7A01G168300.1	Wheat	nucleus	87.69	86.86
TraesCS7B01G073100.1	Wheat	cytosol	87.12	86.2
HORVU7Hr1G035280.12	Barley	cytosol	87.31	86.15
Zm00001d044971_P005	Maize	cytosol, nucleus, plastid	89.04	85.9
Zm00001d044436_P001	Maize	extracellular, mitochondrion	9.42	80.99
GSMUA_Achr3P08080_001	Banana	cytosol	72.88	75.35
VIT_18s0001g15400.t01	Wine grape	cytosol	66.44	66.83
KRH53382	Soybean	nucleus	66.54	66.6
KRH64551	Soybean	nucleus	66.35	65.71
Solyc04g064700.2.1	Tomato	nucleus	64.42	64.42
Bra000641.1-P	Field mustard	cytosol	62.69	62.63
Bra037857.1-P	Field mustard	cytosol	14.04	58.17
Bra022968.1-P	Field mustard	nucleus	54.52	55.59
Bra037858.1-P	Field mustard	cytosol	4.23	53.01
CDY36202	Canola	cytosol, extracellular	6.15	45.39
CDY36200	Canola	peroxisome	0.58	31.58
Zm00001d038644_P004	Maize	nucleus	24.81	16.03
Zm00001d010719_P002	Maize	nucleus	24.04	15.7

Protein Annotations

MapMan:15.3.6.3.2	Gene3D:2.30.30.30	Gene3D:3.30.70.940	UniProt:A0A1D6LUW6	ProteinID:AQK83106.1	ProteinID:AQK83107.1
ProteinID:AQK83109.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0003746	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0032784	InterPro:IPR014722	InterPro:IPR036735
InterPro:KOW	InterPro:NGN_dom	InterPro:NGN_dom_sf	PFAM:PF00467	PFAM:PF03439	PFAM:PF11942
PIRSF:PIRSF036945	ScanProsite:PS01108	PANTHER:PTHR11125	PANTHER:PTHR11125:SF7	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS
SMART:SM00738	SMART:SM00739	SUPFAM:SSF50104	InterPro:Spt5_N	InterPro:TF_Spt5	InterPro:TF_Spt5_NGN-domain
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000844FB0A	EnsemblPlantsGene:Zm00001d037142	EnsemblPlants:Zm00001d037142_P001	EnsemblPlants:Zm00001d037142_T001	SEG:seg

Description

Putative transcription elongation factor SPT5 homolog 1

Coordinates

chr6:-:113765593..113776411

Molecular Weight (calculated)

114819.0 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.610

Length

1040 amino acids

Sequence
(BLAST)

0001: MARRDHDDDD EEEVEEEAYD LDEEEDDEDE EDDYEEEARR GKASRGGGKG GGGRKRSRED NFIDDSAIED EDEDDDDDGG GRPRKKGGGG VRGFFDEEAQ
0101: VDEDEEEEDE GEGEDDFIND AGADLPDEDV VRGSRRHSIP MRDEEEDIDE IERQVRERYA RSTHIEYGEE AAEVEQQALL PSVKDPKLWM VKCAIGHERE
0201: TAICLMQKFI DRSDLQIKSV VALDHLKNYI YVEAEKEAHV KEACKGLRNI YASAKITLVP IKEMADVLSV ESKSVDLSRD SWVRMKLGIY KGDLAKVVDV
0301: DNVRQRVDVK LIPRIDLQAL ASKLEGESVK KKAFVPPPRF FNIDEAREMH IRVERRRDKE SGEYFEWVDN LKFKDGFLYK SVSTKSIHTN NIQPNFDELE
0401: KFKKPGDDMN GDMASLSTLF ANRKKGHFMK GDAVIVIKGD LKNLEGWVEK VEDETVHIRP KISDLPKTLA FNEKELCKYF KPGDHVKVIS GVQEGATGMV
0501: VKVEGHVLII LSDTTKEHIR VFADHVVESS EITTGITRIG DYELHDLVLL DNLSFGVIIR VEAEAFQVLK GVPDRPEVVL VKLREIKSKI DRRSSAKDRS
0601: NNIISAKDVI RVVEGACKGK QGPVEHIHKG MLFIYDRHHL EHAGFICAKA QSCLLVGGST GGHRGNGMDT VDARLGALRS SASILQSPGR LPPRGPNMNY
0701: GGRFGGGRGG RCDALVGKCI KIKSGPYKGY RGRVKEVTGA LVRVELDSLM KIVTVKRDDI ADTPTVATPF REPRYSLGGE TPMHPSRTPH HAYQTPMRDP
0801: GATPIHEGMR TPMRSRAWAP MSPPRDNWED GNPATWGSSP AYQPGTPQAR PYEAPTPGSG WANTPGVSFN DAPTPRDNYA NAPSPYVPST PVGQPMTPNS
0901: ASYLPGTPGG QPMTPGNAGM DMMSPIIGGE GEATWLLPDV LVNVLSGGDD GPGVVREVLG DGSCRVALGS SGNGDMVTVL PNEVEVIRPK KSDKIKILNG
1001: SFRGHTGKLI GIDGSDGIVR LDDTYEVKIL DMVILAKLAT

Best Arabidopsis Sequence Match ( AT4G08350.1 )
(BLAST)

0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P

Arabidopsis Description

GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.