Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | KRG89867 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | KRH14678 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | KRH73469 | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64551 | Soybean | nucleus | 96.25 | 95.24 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 78.54 | 78.92 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 11.07 | 78.77 |
| AT4G08350.1 | Thale cress | nucleus | 72.76 | 72.62 |
| CDY34005 | Canola | cytosol | 72.76 | 72.0 |
| CDX83142 | Canola | cytosol | 71.8 | 71.66 |
| Bra000641.1-P | Field mustard | cytosol | 71.8 | 71.66 |
| Solyc04g064700.2.1 | Tomato | nucleus | 71.61 | 71.54 |
| Os06t0208300-01 | Rice | cytosol | 19.83 | 70.79 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 68.05 | 70.28 |
| PGSC0003DMT400063938 | Potato | nucleus | 56.5 | 69.3 |
| CDX75158 | Canola | cytosol | 44.08 | 68.87 |
| EER88041 | Sorghum | nucleus | 67.76 | 67.05 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 7.8 | 66.94 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 67.56 | 66.79 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 67.56 | 66.6 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 67.28 | 66.57 |
| Zm00001d037142_P001 | Maize | cytosol | 66.6 | 66.54 |
| CDY36201 | Canola | cytosol | 13.76 | 66.2 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 66.89 | 66.06 |
| Bra037857.1-P | Field mustard | cytosol | 15.3 | 63.35 |
| OQU85804 | Sorghum | cytosol | 61.31 | 62.88 |
| AT2G34210.1 | Thale cress | nucleus | 59.48 | 62.49 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 64.0 | 61.69 |
| CDY61565 | Canola | nucleus | 57.94 | 61.43 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 61.02 | 61.08 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 61.02 | 60.96 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 60.73 | 60.85 |
| Bra022968.1-P | Field mustard | nucleus | 58.61 | 59.71 |
| CDX84655 | Canola | nucleus | 58.33 | 59.35 |
| Os02t0772000-00 | Rice | nucleus | 19.25 | 57.8 |
| Bra037858.1-P | Field mustard | cytosol | 4.52 | 56.63 |
| KRH35991 | Soybean | nucleus | 23.87 | 17.08 |
| KRG90770 | Soybean | nucleus | 23.97 | 16.66 |
| KRG90810 | Soybean | mitochondrion | 11.45 | 13.28 |
Protein Annotations
| EntrezGene:100801380 | MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EMBL:ACUP02003463 | EnsemblPlantsGene:GLYMA_06G122500 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006368 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032044 | GO:GO:0032784 | InterPro:IPR014722 |
| InterPro:IPR036735 | UniProt:K7KUN4 | InterPro:KOW | EnsemblPlants:KRH53382 | ProteinID:KRH53382 | ProteinID:KRH53382.1 |
| InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 |
| ScanProsite:PS01108 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 |
| InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0002339A27 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:+:9987698..9996359
Molecular Weight (calculated)
115085.0 Da
IEP (calculated)
5.154
GRAVY (calculated)
-0.665
Length
1039 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSRRGMDDDD EEEYEEEDEQ VADFDEEEEE DNHRGRGGGG GRKRRRSGFI DDDAEEVDED EDEEDDDDED FDGRGGGGGR RRQYKKVSAS NFFDEEAVVD
0101: SDEEEEEEEG EDDFIVEGGA DLPEEDDGRK MRSSRMLPHH QEDHEDLEAM ARSIQERYGR RLTDYDEETT DVEQQALLPS VRDPKLWMVK CAIGRERETA
0201: VCLMQKYIDK GSELQIRSAI ALDHLKNYIY VEADKEAHVR EACKGLRNIF GQKITLVPIR EMTDVLSVES KAIDLARDTW VRMKIGTYKG DLAKVVDVDN
0301: VRQRVTVKLI PRIDLQALAN KLEGREVVKK KAFVPPPRFM NVDEARELHI RVEHRRDAYG ERFDAIGGMM FKDGFLYKTV SIKSISAQNI KPTFDELEKF
0401: RKPGESGDGD VASLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGKVEKVD EDNVHIRPEM EDLPKTIAVN EKELCKYFEP GNHVKVVSGA QEGATGMVVK
0501: VEQHVLILIS DTTKEHIRVF ADDVVESSEV TTGVTRIGDY ELRDLVLLDN NSFGVIIRVE SEAFQVLKGI PDRPEVVLIK LREIKCKIDK KISVQDRFKN
0601: TVSSKDVVRI VDGPCKGKQG PVEHIYRGIL FIFDRHHLEH AGFICAKAQS CVVVGGSRSS GERNGDAYSR FASLRSPSRI PPSPRRFSRG GPMDSGGRHR
0701: GGRGHDSLAG TTVKVRQGPY KGYRGRVIDV KGTTVRVELE SQMKVVTVDR NHISDNVAVT PYRDTSRYGM GSETPMHPSR TPLHPYMTPM RDPGATPIHD
0801: GMRTPMHSRA WNPYTPMSPP RDNWEDGNPG SWGASPQYQP GSPPSRPYEA PTPGAGWAST PGGNYSEAGT PRDSSAYANA PSPYLPSTPG GQPMTPSSAS
0901: YLPGTPGGQP MTPGTGGMDM MSPVLGGENE GPWFIPDILV NVHRAGEESI GVIREALPDG SYRVGLGSSG NGETITALPN EMEAVVPRKS DKIKIMGGAL
1001: RGATGKLIGV DGTDGIVKVD DTLDVKILDL VILAKLAQP
0101: SDEEEEEEEG EDDFIVEGGA DLPEEDDGRK MRSSRMLPHH QEDHEDLEAM ARSIQERYGR RLTDYDEETT DVEQQALLPS VRDPKLWMVK CAIGRERETA
0201: VCLMQKYIDK GSELQIRSAI ALDHLKNYIY VEADKEAHVR EACKGLRNIF GQKITLVPIR EMTDVLSVES KAIDLARDTW VRMKIGTYKG DLAKVVDVDN
0301: VRQRVTVKLI PRIDLQALAN KLEGREVVKK KAFVPPPRFM NVDEARELHI RVEHRRDAYG ERFDAIGGMM FKDGFLYKTV SIKSISAQNI KPTFDELEKF
0401: RKPGESGDGD VASLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGKVEKVD EDNVHIRPEM EDLPKTIAVN EKELCKYFEP GNHVKVVSGA QEGATGMVVK
0501: VEQHVLILIS DTTKEHIRVF ADDVVESSEV TTGVTRIGDY ELRDLVLLDN NSFGVIIRVE SEAFQVLKGI PDRPEVVLIK LREIKCKIDK KISVQDRFKN
0601: TVSSKDVVRI VDGPCKGKQG PVEHIYRGIL FIFDRHHLEH AGFICAKAQS CVVVGGSRSS GERNGDAYSR FASLRSPSRI PPSPRRFSRG GPMDSGGRHR
0701: GGRGHDSLAG TTVKVRQGPY KGYRGRVIDV KGTTVRVELE SQMKVVTVDR NHISDNVAVT PYRDTSRYGM GSETPMHPSR TPLHPYMTPM RDPGATPIHD
0801: GMRTPMHSRA WNPYTPMSPP RDNWEDGNPG SWGASPQYQP GSPPSRPYEA PTPGAGWAST PGGNYSEAGT PRDSSAYANA PSPYLPSTPG GQPMTPSSAS
0901: YLPGTPGGQP MTPGTGGMDM MSPVLGGENE GPWFIPDILV NVHRAGEESI GVIREALPDG SYRVGLGSSG NGETITALPN EMEAVVPRKS DKIKIMGGAL
1001: RGATGKLIGV DGTDGIVKVD DTLDVKILDL VILAKLAQP
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.