Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G304800.1 | Wheat | nucleus | 93.92 | 93.65 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 93.73 | 93.64 |
| OQU85804 | Sorghum | cytosol | 67.21 | 68.81 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 68.27 | 67.36 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 63.84 | 65.81 |
| Os02t0772000-00 | Rice | nucleus | 21.79 | 65.32 |
| KRH53382 | Soybean | nucleus | 60.85 | 60.73 |
| KRH64551 | Soybean | nucleus | 61.14 | 60.38 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 58.44 | 58.61 |
| Solyc04g064700.2.1 | Tomato | nucleus | 58.44 | 58.27 |
| Bra000641.1-P | Field mustard | cytosol | 56.22 | 56.0 |
| Bra037857.1-P | Field mustard | cytosol | 13.31 | 54.98 |
| Bra022968.1-P | Field mustard | nucleus | 50.14 | 50.98 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 10.99 | 46.53 |
| Bra037858.1-P | Field mustard | cytosol | 3.66 | 45.78 |
| AT4G08360.1 | Thale cress | cytosol | 5.5 | 40.43 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 22.47 | 14.83 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032784 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 |
| PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 | InterPro:Rib_L2_dom2 |
| SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain |
| EnsemblPlantsGene:TraesCS6B01G355400 | EnsemblPlants:TraesCS6B01G355400.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06083 | TIGR:cd06084 |
| TIGR:cd06085 | TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6B:-:623690236..623696849
Molecular Weight (calculated)
114058.0 Da
IEP (calculated)
4.841
GRAVY (calculated)
-0.552
Length
1037 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSRRGREEEE EFEEVEEEEE ADESEVEEER GEKRLRGGGG KGSGVASFID DAASEDDDEE EEEEEDDDDE DDDYEEGGRG RGRRPSKRKR SILIDDMAQV
0101: DDDDGEEEEE DGYEEGFIDD DARADNPDED VQRGSRRHFN PNPMDDADDM ENLEEMLKWK YRTQSHSDFD EEGLTEVEQQ ALLPSVNDPK LWMVKCAIGH
0201: ERETALCLMQ KFIDRQDLQI KSVVALEHLK NYIYVEAEKE AHVKEACKGL RNIFSSAKIL LVPTKEMTDV LSVTSKSADL SIDTWVRLKL GIYKGDLAKV
0301: VEVDDVRQKV TVKVIPRLDL QALTDKLKGL KVAKKKSFIP PPRLFSTDEA REMNIPVERR RDRDSGEYFE MVGALKFEDG FLRKIVSIKS ISTQNVMPSL
0401: DELEKFGRVG DDVNEDVARL STLSRKKGHF MKSDAVVVVK GDLKDIRGCV EKVEDSIVHI RPTPTQSDLP KTLAFSEKDL CKYFNPGDHV KVVFGVQEGV
0501: TGMVVKVEGH VLTILSDTSK EHIRVFADHV VESSEVTTGL TRIGDYELHD LVLLDNLSFG VIVRVESEAF QVLKGVPDKP EVVLVKLREI KYKIDRRTSA
0601: KDSRNNTVST KDIVRVIEGP CKGKQGPVEH IHKGICFIHD RHHLEHSGFI CAKAQSCVLV GGSVVNSSRM GVDTADPRLG AFRSPARILQ SPGGLPPRGP
0701: YMNSGGRFGG GGRGGRGHDA LVSRCIKIKS GPYKGYRGRV KEVNGALVRV ELDSLMKIVT VKREDIADTA NVGTPFRESR YSLGSETPMH PSRTPLYPIQ
0801: TPMREPGATP ICDGSQTPMH NQAWAPMSPP RDNQEDGNRG TWGAWGSSPA YQPGTPVARP FDAPTPGSGW ESTSGTGFGD APFNAPTPSA QPMTPIPASY
0901: LPGTPGGQLM TPGNAGMGAM SPMIGDEGGS NWLLPDVCVN VSRGDGSTNG VVKEVLLDGS CRVALGPSGS GDEVTALPDE LEIIRPKKSD RVKIMNGSMR
1001: GVIGRLVGVD GSDGIVRVEN PLDMKIVDLV ILGKLAT
0101: DDDDGEEEEE DGYEEGFIDD DARADNPDED VQRGSRRHFN PNPMDDADDM ENLEEMLKWK YRTQSHSDFD EEGLTEVEQQ ALLPSVNDPK LWMVKCAIGH
0201: ERETALCLMQ KFIDRQDLQI KSVVALEHLK NYIYVEAEKE AHVKEACKGL RNIFSSAKIL LVPTKEMTDV LSVTSKSADL SIDTWVRLKL GIYKGDLAKV
0301: VEVDDVRQKV TVKVIPRLDL QALTDKLKGL KVAKKKSFIP PPRLFSTDEA REMNIPVERR RDRDSGEYFE MVGALKFEDG FLRKIVSIKS ISTQNVMPSL
0401: DELEKFGRVG DDVNEDVARL STLSRKKGHF MKSDAVVVVK GDLKDIRGCV EKVEDSIVHI RPTPTQSDLP KTLAFSEKDL CKYFNPGDHV KVVFGVQEGV
0501: TGMVVKVEGH VLTILSDTSK EHIRVFADHV VESSEVTTGL TRIGDYELHD LVLLDNLSFG VIVRVESEAF QVLKGVPDKP EVVLVKLREI KYKIDRRTSA
0601: KDSRNNTVST KDIVRVIEGP CKGKQGPVEH IHKGICFIHD RHHLEHSGFI CAKAQSCVLV GGSVVNSSRM GVDTADPRLG AFRSPARILQ SPGGLPPRGP
0701: YMNSGGRFGG GGRGGRGHDA LVSRCIKIKS GPYKGYRGRV KEVNGALVRV ELDSLMKIVT VKREDIADTA NVGTPFRESR YSLGSETPMH PSRTPLYPIQ
0801: TPMREPGATP ICDGSQTPMH NQAWAPMSPP RDNQEDGNRG TWGAWGSSPA YQPGTPVARP FDAPTPGSGW ESTSGTGFGD APFNAPTPSA QPMTPIPASY
0901: LPGTPGGQLM TPGNAGMGAM SPMIGDEGGS NWLLPDVCVN VSRGDGSTNG VVKEVLLDGS CRVALGPSGS GDEVTALPDE LEIIRPKKSD RVKIMNGSMR
1001: GVIGRLVGVD GSDGIVRVEN PLDMKIVDLV ILGKLAT
001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
Arabidopsis Description
Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.