Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 12.43 | 85.62 |
| Os06t0208300-01 | Rice | cytosol | 22.47 | 77.66 |
| Zm00001d037142_P001 | Maize | cytosol | 75.35 | 72.88 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 76.04 | 72.79 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 75.84 | 72.67 |
| EER88041 | Sorghum | nucleus | 75.84 | 72.67 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 75.65 | 72.34 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 75.75 | 72.3 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 71.47 | 69.54 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 73.06 | 68.18 |
| KRH53382 | Soybean | nucleus | 70.28 | 68.05 |
| KRH64551 | Soybean | nucleus | 70.78 | 67.81 |
| Solyc04g064700.2.1 | Tomato | nucleus | 67.4 | 65.19 |
| OQU85804 | Sorghum | cytosol | 65.41 | 64.96 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 66.1 | 64.07 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 65.81 | 63.84 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 65.9 | 63.75 |
| Bra000641.1-P | Field mustard | cytosol | 64.61 | 62.44 |
| Bra022968.1-P | Field mustard | nucleus | 57.06 | 56.27 |
| Bra037857.1-P | Field mustard | cytosol | 13.92 | 55.78 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 13.42 | 55.1 |
| Os02t0772000-00 | Rice | nucleus | 18.49 | 53.76 |
| Bra037858.1-P | Field mustard | cytosol | 4.37 | 53.01 |
| AT4G08360.1 | Thale cress | cytosol | 6.66 | 47.52 |
| CDY36202 | Canola | cytosol, extracellular | 6.46 | 46.1 |
| CDY36200 | Canola | peroxisome | 0.6 | 31.58 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 18.79 | 29.91 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 |
| EnsemblPlantsGene:GSMUA_Achr3G08080_001 | EnsemblPlants:GSMUA_Achr3P08080_001 | EnsemblPlants:GSMUA_Achr3T08080_001 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW |
| UniProt:M0SCS5 | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 |
| SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI000296AAEE | SEG:seg | : | : | : | : |
Description
Putative transcription elongation factor SPT5 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08080_001]
Coordinates
chr3:+:5689833..5701230
Molecular Weight (calculated)
112184.0 Da
IEP (calculated)
5.143
GRAVY (calculated)
-0.573
Length
1006 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARGRHRDED DDFIDDDEEE EMEEEEEEEE EEEEEEEDED DEDDGGHRGR KQRRRSGSEF FELEAVVDSD DEEEEEEGED DFINDAGADL PDEDDNRRLP
0101: HRPILMQEDQ EDVEEMERRV KERYSKSNQI DYAEDATDVE QQALLPSVKD PKLWMVKCAI GHERETAICL MQKFIDRADL QIRSVIALDH LKNYIYVEAE
0201: KEAHVKEACK GLRNIFSSAK VMLVPIKEMT DVLSVESKAV ELSRDTWVRM KIGIYKGDLA KVVDVDNVRQ KVTVKLIPRV DLQTLANKLE GRDIGKKKTF
0301: VPPPRFFNID EAREMHIRVE RRRDKDSGEY FEMVDGMMFK DGFLYKIVSL RSISSQNIQP TFDELEKFRK PGDDVDGDVA SLSTLFANRK KGHFMKGDAV
0401: IVVRGDLKNL MGWVEKVEEE TVHVRPKMTG LPKTLAFNEK ELCKYFKPGD HVKVVSGVQE GATGMVVKVE GHVLIILSDT TKEHIRVFAD HVVESSEITT
0501: GVTRVGDYEL HDLVLLDNMS FGVIIRVETE AFQVLKGVAD RPEIVLVKLR EIKCKIERRS NAKDRSNNIV SIKDVVRVVD GPWRGKQGPV EHIHRGFLFI
0601: HDRHHLEHAG FICSKAQSCV VVGGSHGGSD RKSVDSLDSR FGAFRSSPHI LQSPRRLPLR GPPVDFGGGF RGGRGHDSLI GKCIKIKSGP LKGYRGRVKE
0701: VTGPLVRVEL DSQMKIVTVN RKDIADATGV ATPFRDSRYG LGSETPMHPS RTPLHPYQTP MRDPGATPIH DGMRTPMRDR AWAPMSPARD SWEEGNPATW
0801: GTSPQYQLGT PVRTYEAPTP GSGWASTPGG NYSDSATPRE SSYGSAPSPY LPSTPSGQPM TPSSASYLPG TPGGQPMTPG NVGLDIMSPT IGGENEGNWY
0901: MPDIFVNIVK PGGDSHVGIV REVLMDGSCK VALGSVGNGE TLTIGSSDLE VVRPKKSDKI KIMNGTLRGV TGKLIGIDGS DGIVKLDDTY EVKILDMVIL
1001: AKLATT
0101: HRPILMQEDQ EDVEEMERRV KERYSKSNQI DYAEDATDVE QQALLPSVKD PKLWMVKCAI GHERETAICL MQKFIDRADL QIRSVIALDH LKNYIYVEAE
0201: KEAHVKEACK GLRNIFSSAK VMLVPIKEMT DVLSVESKAV ELSRDTWVRM KIGIYKGDLA KVVDVDNVRQ KVTVKLIPRV DLQTLANKLE GRDIGKKKTF
0301: VPPPRFFNID EAREMHIRVE RRRDKDSGEY FEMVDGMMFK DGFLYKIVSL RSISSQNIQP TFDELEKFRK PGDDVDGDVA SLSTLFANRK KGHFMKGDAV
0401: IVVRGDLKNL MGWVEKVEEE TVHVRPKMTG LPKTLAFNEK ELCKYFKPGD HVKVVSGVQE GATGMVVKVE GHVLIILSDT TKEHIRVFAD HVVESSEITT
0501: GVTRVGDYEL HDLVLLDNMS FGVIIRVETE AFQVLKGVAD RPEIVLVKLR EIKCKIERRS NAKDRSNNIV SIKDVVRVVD GPWRGKQGPV EHIHRGFLFI
0601: HDRHHLEHAG FICSKAQSCV VVGGSHGGSD RKSVDSLDSR FGAFRSSPHI LQSPRRLPLR GPPVDFGGGF RGGRGHDSLI GKCIKIKSGP LKGYRGRVKE
0701: VTGPLVRVEL DSQMKIVTVN RKDIADATGV ATPFRDSRYG LGSETPMHPS RTPLHPYQTP MRDPGATPIH DGMRTPMRDR AWAPMSPARD SWEEGNPATW
0801: GTSPQYQLGT PVRTYEAPTP GSGWASTPGG NYSDSATPRE SSYGSAPSPY LPSTPSGQPM TPSSASYLPG TPGGQPMTPG NVGLDIMSPT IGGENEGNWY
0901: MPDIFVNIVK PGGDSHVGIV REVLMDGSCK VALGSVGNGE TLTIGSSDLE VVRPKKSDKI KIMNGTLRGV TGKLIGIDGS DGIVKLDDTY EVKILDMVIL
1001: AKLATT
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.