Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra034318.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | Bra034318.1-P | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83142 | Canola | cytosol | 100.0 | 100.0 |
| AT4G08350.1 | Thale cress | nucleus | 85.78 | 85.78 |
| Bra037857.1-P | Field mustard | cytosol | 18.64 | 77.29 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 10.47 | 74.66 |
| Bra037858.1-P | Field mustard | cytosol | 5.86 | 73.49 |
| KRH53382 | Soybean | nucleus | 71.66 | 71.8 |
| KRH64551 | Soybean | nucleus | 72.05 | 71.43 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 70.61 | 71.08 |
| Bra022968.1-P | Field mustard | nucleus | 64.55 | 65.88 |
| Os06t0208300-01 | Rice | cytosol | 18.25 | 65.29 |
| Solyc04g064700.2.1 | Tomato | nucleus | 65.13 | 65.19 |
| PGSC0003DMT400063938 | Potato | nucleus | 52.93 | 65.05 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 62.44 | 64.61 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 7.3 | 62.81 |
| Zm00001d037142_P001 | Maize | cytosol | 62.63 | 62.69 |
| EER88041 | Sorghum | nucleus | 62.25 | 61.71 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 61.58 | 60.93 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 61.58 | 60.82 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 61.29 | 60.76 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 61.29 | 60.7 |
| OQU85804 | Sorghum | cytosol | 58.41 | 60.02 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 59.27 | 57.24 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 56.96 | 57.02 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 56.39 | 56.55 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 56.0 | 56.22 |
| Os02t0772000-00 | Rice | nucleus | 18.54 | 55.78 |
| Bra009470.1-P | Field mustard | nucleus | 22.86 | 15.42 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EnsemblPlantsGene:Bra000641 | EnsemblPlants:Bra000641.1 | EnsemblPlants:Bra000641.1-P |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | UniProt:M4C8W3 |
| InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 |
| ScanProsite:PS01108 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 |
| InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0002540265 | SEG:seg |
Description
AT2G34210 (E=0.0) | structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor
Coordinates
chrA03:-:12223207..12228318
Molecular Weight (calculated)
115000.0 Da
IEP (calculated)
4.986
GRAVY (calculated)
-0.639
Length
1041 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRHRGEEDD VDEDYDGMEL EEEEEEDEGR SRGGGSRQKR GRSSFFDDYA EEDSEEEEDD DDDEDYGSRR GKGGGGGAAK RKKSSAAMFV DDIADQVDDD
0101: DEEGDEEDGE DGFIVDTGTD LPDERVDRRR YHDRGFDEND EDVDDLERRI QERFSRPQED YDEEATDVEQ QALLPSVRDP KLWMVKCAIG REREVAVCLM
0201: QKYIDRGSDL QIRSVVALDH LKNYIYVEAD KEAHVKEAIK GMRNIYANQK ILLVPIREMT DVLSVESKAI DLSRDTWVRM KIGTYKGDLA KVVDVDNVRQ
0301: RVTVKLIPRI DLQALASKLD GREVAKKKAF VPPPRFMNID EARELHIRVE RRRDPMTGDY FENIGGMLFK DGFMYKTVSL KSIIAQNVTP TFDELEKFNK
0401: PSENGESGDF GGLSTLFANR KKGHFMKGDA VIVIKGDLKN LKGWVEKVDE DNVLIRSGLK GLPDPLAVNE KELCKYFEPG NHVKVVSGTH EGATGMVVKV
0501: DQHVLILLSD TTKEHVRVFA DHVVESSEVT TGVTKIGQYE LHDLVLLDNL TFGVTIRLEN EAFQVLKGNP DRPEVALVKL REIKCKLDRK ISVQDRYKNV
0601: ISVGDDVRIV EGPSKGKQGP VRHIYKGVLF IYDRHHLEHA GFICAKCTSC VVVGGSRSGA NRSGGDSLSR FSNFKAPAPV PPSPRRFQRG GMGYNARGRG
0701: RGGRGGRDDS LLGTTVKIRL GPFKGYRGPV VEVKGDSVRV ELEMKILYNA VDRNAISDNV AVTTPSRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWEE GNPGSWGTSP NYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDSGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVEIHKAGED SDVGVIRDVS DGTCKVSLGS NGEGDTIMAL PGELEIVPPR KNDRVKIVGG
1001: QYRGSIGKLI GIDGSDGIVK IEDNLDVKIL DLAILAKFVQ P
0101: DEEGDEEDGE DGFIVDTGTD LPDERVDRRR YHDRGFDEND EDVDDLERRI QERFSRPQED YDEEATDVEQ QALLPSVRDP KLWMVKCAIG REREVAVCLM
0201: QKYIDRGSDL QIRSVVALDH LKNYIYVEAD KEAHVKEAIK GMRNIYANQK ILLVPIREMT DVLSVESKAI DLSRDTWVRM KIGTYKGDLA KVVDVDNVRQ
0301: RVTVKLIPRI DLQALASKLD GREVAKKKAF VPPPRFMNID EARELHIRVE RRRDPMTGDY FENIGGMLFK DGFMYKTVSL KSIIAQNVTP TFDELEKFNK
0401: PSENGESGDF GGLSTLFANR KKGHFMKGDA VIVIKGDLKN LKGWVEKVDE DNVLIRSGLK GLPDPLAVNE KELCKYFEPG NHVKVVSGTH EGATGMVVKV
0501: DQHVLILLSD TTKEHVRVFA DHVVESSEVT TGVTKIGQYE LHDLVLLDNL TFGVTIRLEN EAFQVLKGNP DRPEVALVKL REIKCKLDRK ISVQDRYKNV
0601: ISVGDDVRIV EGPSKGKQGP VRHIYKGVLF IYDRHHLEHA GFICAKCTSC VVVGGSRSGA NRSGGDSLSR FSNFKAPAPV PPSPRRFQRG GMGYNARGRG
0701: RGGRGGRDDS LLGTTVKIRL GPFKGYRGPV VEVKGDSVRV ELEMKILYNA VDRNAISDNV AVTTPSRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWEE GNPGSWGTSP NYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDSGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVEIHKAGED SDVGVIRDVS DGTCKVSLGS NGEGDTIMAL PGELEIVPPR KNDRVKIVGG
1001: QYRGSIGKLI GIDGSDGIVK IEDNLDVKIL DLAILAKFVQ P
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.