Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400058471 | |
PGSC0003DMT400069459 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G08350.1 | PGSC0003DMT400058471 | AT2G27040.1 | 19343051 |
AT4G08350.1 | PGSC0003DMT400069459 | AT2G27040.1 | 19343051 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc04g064700.2.1 | Tomato | nucleus | 91.5 | 74.52 |
CDX75158 | Canola | cytosol | 49.35 | 62.86 |
CDY36201 | Canola | cytosol | 14.99 | 58.8 |
VIT_18s0001g15400.t01 | Wine grape | cytosol | 71.66 | 58.7 |
Bra037858.1-P | Field mustard | cytosol | 5.67 | 57.83 |
KRH53382 | Soybean | nucleus | 69.3 | 56.5 |
KRH64551 | Soybean | nucleus | 69.89 | 56.38 |
AT4G08350.1 | Thale cress | nucleus | 66.59 | 54.18 |
Bra037857.1-P | Field mustard | cytosol | 15.7 | 52.99 |
CDX83142 | Canola | cytosol | 65.05 | 52.93 |
Bra000641.1-P | Field mustard | cytosol | 65.05 | 52.93 |
CDY34005 | Canola | cytosol | 65.53 | 52.86 |
AT2G34210.1 | Thale cress | nucleus | 55.84 | 47.83 |
CDY61565 | Canola | nucleus | 53.72 | 46.43 |
Bra022968.1-P | Field mustard | nucleus | 55.49 | 46.08 |
CDX84655 | Canola | nucleus | 55.49 | 46.03 |
PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 1.65 | 5.71 |
Protein Annotations
MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | UniProt:M1CBH1 |
InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | EnsemblPlantsGene:PGSC0003DMG401024850 |
PGSC:PGSC0003DMG401024850 | EnsemblPlants:PGSC0003DMT400063938 | ScanProsite:PS01108 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf |
UniParc:UPI0002958672 | SEG:seg | : | : | : | : |
Description
Suppressor of ty [Source:PGSC_GENE;Acc:PGSC0003DMG401024850]
Coordinates
chr4:+:58225342..58234347
Molecular Weight (calculated)
95100.6 Da
IEP (calculated)
5.429
GRAVY (calculated)
-0.719
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRQRDYDDD DDEPEEEEDD VYEEEEEEEE EDDRGKAGRK RRRSDFIDDA AEEDDDEDED DDDEDYGGGG GGGGGGGGGG RRRPKRRTGS EFFDLEAAVD
101: SDEDEEEEEG EDDFIVDSGA DIPDEDGARR EYRHRLLPHE DQEEDLEELT RSIKQRYARS PHVEYDEEAT DVEQQALLPS VRDPKLWMVK CAIGREREVA
201: VCLMQKAIDR GPELQIRSVV ALDHLKNYIY IEADKEAHVR EACKGMRNIY ASAKIMLVPI KEMTDVLSVE SKAVDLARDT WVRMKMGTYK GDLAKVMDVD
301: NVRQKVVVKL IPRIDLQALA NKLEGRDAPK KKAFIPPPRF MNIDEAREMN VRVERRRDPM SGDYFENIGG MMFKDGFLYK TVSMKSISTL NIQPTFDELE
401: KFRQTGEGGD GDMASLSTLF ANRKKGHFMK GDRVIVVKGD LRNLKGHVEK VEEDTVHIRP NQKDLPLTLA FSDKELCKYF DLGNHVKVVS GSSEGATGMV
501: VSVQGHVVNL VSDTTKELLR VFADNVVESS EVTSGLTRIG EYELHDLVIL DNKSFGVIIR VDSEAFQVLK GVPDRPEVAL VRLREIKAKV EKKGNAQDRY
601: KNHLAVKDVV KVLEGPCKGK QGPVEHIFRG VVFIYDRHHL EHAGYICAKT QSCVLVGGSR ANGDRNGNPM SSRFAHMRAP PRAPQSPMRS SRGGPPMSYG
701: GRHRGGRGQD ALVGADVKIR LGPFKGCKGR VVDIKGTSVR VELEAQMKVV TGKFDRNHIS DNVNVSVPFR EPSRYGLGSE TPSHPSRTPL HPFMTPMRDP
801: GATPIHDGMR TPMRDRAWNP MSPPRYVVSL AKISPMTQGF ENRMTAM
101: SDEDEEEEEG EDDFIVDSGA DIPDEDGARR EYRHRLLPHE DQEEDLEELT RSIKQRYARS PHVEYDEEAT DVEQQALLPS VRDPKLWMVK CAIGREREVA
201: VCLMQKAIDR GPELQIRSVV ALDHLKNYIY IEADKEAHVR EACKGMRNIY ASAKIMLVPI KEMTDVLSVE SKAVDLARDT WVRMKMGTYK GDLAKVMDVD
301: NVRQKVVVKL IPRIDLQALA NKLEGRDAPK KKAFIPPPRF MNIDEAREMN VRVERRRDPM SGDYFENIGG MMFKDGFLYK TVSMKSISTL NIQPTFDELE
401: KFRQTGEGGD GDMASLSTLF ANRKKGHFMK GDRVIVVKGD LRNLKGHVEK VEEDTVHIRP NQKDLPLTLA FSDKELCKYF DLGNHVKVVS GSSEGATGMV
501: VSVQGHVVNL VSDTTKELLR VFADNVVESS EVTSGLTRIG EYELHDLVIL DNKSFGVIIR VDSEAFQVLK GVPDRPEVAL VRLREIKAKV EKKGNAQDRY
601: KNHLAVKDVV KVLEGPCKGK QGPVEHIFRG VVFIYDRHHL EHAGYICAKT QSCVLVGGSR ANGDRNGNPM SSRFAHMRAP PRAPQSPMRS SRGGPPMSYG
701: GRHRGGRGQD ALVGADVKIR LGPFKGCKGR VVDIKGTSVR VELEAQMKVV TGKFDRNHIS DNVNVSVPFR EPSRYGLGSE TPSHPSRTPL HPFMTPMRDP
801: GATPIHDGMR TPMRDRAWNP MSPPRYVVSL AKISPMTQGF ENRMTAM
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.