Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | CDX77061 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY04475 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY48192 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY56413 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY62055 | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037857.1-P | Field mustard | cytosol | 91.67 | 78.88 |
| CDX75158 | Canola | cytosol | 70.83 | 23.01 |
| AT4G08350.1 | Thale cress | nucleus | 82.87 | 17.2 |
| CDY34005 | Canola | cytosol | 83.33 | 17.14 |
| CDX83142 | Canola | cytosol | 81.48 | 16.91 |
| PGSC0003DMT400063938 | Potato | nucleus | 58.8 | 14.99 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 67.59 | 14.12 |
| KRH64551 | Soybean | nucleus | 67.13 | 13.81 |
| CDY61565 | Canola | nucleus | 62.5 | 13.78 |
| KRH53382 | Soybean | nucleus | 66.2 | 13.76 |
| CDX84655 | Canola | nucleus | 62.04 | 13.12 |
| Solyc04g064700.2.1 | Tomato | nucleus | 59.26 | 12.31 |
| CDY41384 | Canola | nucleus | 24.07 | 6.89 |
| CDY36200 | Canola | peroxisome | 0.46 | 5.26 |
| CDX70245 | Canola | nucleus | 24.07 | 4.61 |
| CDY36202 | Canola | cytosol, extracellular | 2.78 | 4.26 |
| CDX75160 | Canola | cytosol | 2.78 | 2.08 |
Protein Annotations
| EnsemblPlants:CDY36201 | EnsemblPlantsGene:GSBRNA2T00060095001 | Gene3D:2.30.30.30 | InterPro:IPR014722 | InterPro:Rib_L2_dom2 | PANTHER:PTHR11125 |
| ProteinID:CDY36201 | ProteinID:CDY36201.1 | SEG:seg | UniParc:UPI0004EF29DE | UniProt:A0A078HEK0 | MapMan:35.1 |
Description
BnaAnng04470DBnaAnng04470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEK0]
Coordinates
chrLK032369:+:213153..214497
Molecular Weight (calculated)
24198.4 Da
IEP (calculated)
9.613
GRAVY (calculated)
-0.163
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKVDQHVL IILSDTTKEH VRVFADHVVE SSEVTTGVTK IGQYELHDLV LLDNLSFGVL KGNPDRPEVA LVKLREIKCK LDRKISVQDR YKNVIAVKDD
101: VRVIEGPSQG KQGPVRHIYK GVLFIYDRHH LEHAGFICAK CTSCIVVGGS RSGTNRNVSV ISVGWPCSWF SNFKAPAPVP PSPRRFQRGG MGYNGQGNCF
201: HYIYMTCTVR RAHNLL
101: VRVIEGPSQG KQGPVRHIYK GVLFIYDRHH LEHAGFICAK CTSCIVVGGS RSGTNRNVSV ISVGWPCSWF SNFKAPAPVP PSPRRFQRGG MGYNGQGNCF
201: HYIYMTCTVR RAHNLL
001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
Arabidopsis Description
Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.