Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84655 | Canola | nucleus | 93.78 | 90.01 |
| AT2G34210.1 | Thale cress | nucleus | 70.1 | 69.46 |
| CDX75158 | Canola | cytosol | 42.86 | 63.16 |
| CDX83142 | Canola | cytosol | 66.84 | 62.92 |
| CDY34005 | Canola | cytosol | 67.35 | 62.86 |
| CDY36201 | Canola | cytosol | 13.78 | 62.5 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 61.84 | 58.61 |
| KRH53382 | Soybean | nucleus | 61.43 | 57.94 |
| KRH64551 | Soybean | nucleus | 61.63 | 57.52 |
| Solyc04g064700.2.1 | Tomato | nucleus | 58.37 | 55.0 |
| PGSC0003DMT400063938 | Potato | nucleus | 46.43 | 53.72 |
| CDX75160 | Canola | cytosol | 15.61 | 53.12 |
| CDY36202 | Canola | cytosol, extracellular | 7.14 | 49.65 |
| CDY36200 | Canola | peroxisome | 0.61 | 31.58 |
| CDY41384 | Canola | nucleus | 19.39 | 25.17 |
| CDX70245 | Canola | nucleus | 22.96 | 19.95 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:A0A078J5C0 | UniProt:A0A078J5C0 | EnsemblPlants:CDY61565 |
| ProteinID:CDY61565 | ProteinID:CDY61565.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 | EnsemblPlantsGene:GSBRNA2T00034013001 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 |
| PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 |
| InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 |
| InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EE1E25 | SEG:seg | : | : |
Description
BnaCnng37990DTranscription elongation factor SPT5 [Source:UniProtKB/TrEMBL;Acc:A0A078J5C0]
Coordinates
chrLK034011:-:8386..13726
Molecular Weight (calculated)
108848.0 Da
IEP (calculated)
6.865
GRAVY (calculated)
-0.544
Length
980 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHHSDSDDE DYSYDDEQDE PRSSRKKKKR GRSNPDSAGG ARGKKRKPSG SIFIEDDVIV DDEEEDDDDV ENGFIEHGEA DLGAEDVVGR HRHFHEPAAF
101: RSRVGAEEYL DFMQEKYSNP RTEYDDDDDD YEDEALTEVD QQALLPSVRD PKLWMVKCAI GREREVAVCL MQKAVDRGSD FKIRSVIALD HLQNFIYIEA
201: DMEAHVKEAI KGMRNVFANH KILLVPIREM ADVLSVRSKT VELARDTWVR MKLGIYKGDL AQVVDVDDVR RRVTVKLIPR IDLQLLADKQ EGSVIVKKKA
301: FVPPPRFMNV DEARELHIRV ERRRDRMTGD YFENIGNMLF KDGFLYKKVS TKSISTLNVT PTFDELERFK KANENGEIDF VDMSTLFANR KKGHFMKGDE
401: VIVIKGDLKN LKGWVEKVDE ENVLIRSEMK GLHNPLAVNE RELCKYFEPG NHVKVVSGTH KEATGMVVKV DQHVLFLLTD TTKQQIRVFA DHVVKSAEVT
501: NGVTKMGEYE LHDLVLLSNL SFGVIIKLDT EAIQVLKGVP GRPELAIVKH GEIKYKIEKK ITVKDRYKNV MTVKDVVRVT EGPSKGKQGP VMHIYKGVLF
601: LHDRHNVEHA GFVCVKCSSC VLSGGSYSGA DRIVDSFSRL GNSKPPAHVP PSPRRFQRAD LGYNSGSGGR HLSGRGARGN DLLVGAYVRV RLGPYKGYRV
701: NRDAIADGND NVATPSQYNM GSQTPVHPSR TPLHPCMTPM RDSGATPIHN GMRTPMRDRA WNPYTPMSPP RDSWEDGNPG SWGTNSLYPP DSPYSRPYEA
801: ATPGSGWDSS TPGRSYSDAG TPRDANVPSP YQPMTPSSAS YLPSTPGGQP MTPGADLDVK SPDIGGDAET WLMPGILVNV HKAGLGGDSN VGVIRDVLPD
901: GSCLVALGDR GEGETVMAVQ REVRLVCPRK NERVKVVGGK HRGSLAKLIG LDGSDGIVKL DDTLDVKILD LGLLAKLAHA
101: RSRVGAEEYL DFMQEKYSNP RTEYDDDDDD YEDEALTEVD QQALLPSVRD PKLWMVKCAI GREREVAVCL MQKAVDRGSD FKIRSVIALD HLQNFIYIEA
201: DMEAHVKEAI KGMRNVFANH KILLVPIREM ADVLSVRSKT VELARDTWVR MKLGIYKGDL AQVVDVDDVR RRVTVKLIPR IDLQLLADKQ EGSVIVKKKA
301: FVPPPRFMNV DEARELHIRV ERRRDRMTGD YFENIGNMLF KDGFLYKKVS TKSISTLNVT PTFDELERFK KANENGEIDF VDMSTLFANR KKGHFMKGDE
401: VIVIKGDLKN LKGWVEKVDE ENVLIRSEMK GLHNPLAVNE RELCKYFEPG NHVKVVSGTH KEATGMVVKV DQHVLFLLTD TTKQQIRVFA DHVVKSAEVT
501: NGVTKMGEYE LHDLVLLSNL SFGVIIKLDT EAIQVLKGVP GRPELAIVKH GEIKYKIEKK ITVKDRYKNV MTVKDVVRVT EGPSKGKQGP VMHIYKGVLF
601: LHDRHNVEHA GFVCVKCSSC VLSGGSYSGA DRIVDSFSRL GNSKPPAHVP PSPRRFQRAD LGYNSGSGGR HLSGRGARGN DLLVGAYVRV RLGPYKGYRV
701: NRDAIADGND NVATPSQYNM GSQTPVHPSR TPLHPCMTPM RDSGATPIHN GMRTPMRDRA WNPYTPMSPP RDSWEDGNPG SWGTNSLYPP DSPYSRPYEA
801: ATPGSGWDSS TPGRSYSDAG TPRDANVPSP YQPMTPSSAS YLPSTPGGQP MTPGADLDVK SPDIGGDAET WLMPGILVNV HKAGLGGDSN VGVIRDVLPD
901: GSCLVALGDR GEGETVMAVQ REVRLVCPRK NERVKVVGGK HRGSLAKLIG LDGSDGIVKL DDTLDVKILD LGLLAKLAHA
001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGFIVSG EADLPNEDSD
101: HRRQYYQRGF HPHEEDVDEL EKRTLERLST KYAKDDYELD DVNDVDQQAL LPSVRDPKLW LVKCAIGRER EVAVCLMQKI VDRGSEFKIR SAIALDHLQN
201: YVYIEADMEA HVKEAIKGMR NIYANQKILL VPIKEMTAVL SVESKAIDLS RDSWVRMKLG IYKGDLAQVV DVDNVRKRVT VKLIPRIDLQ ALANKLEGTE
301: NVKKKAFAPP PRFMNIDEAR ELHIRVEHRR DPMTGDYFEN IGGMLFKDGF LYKKVSTKSI AAQNVTPTFD ELERFKRPNE NGEIDFVDES TLFANRKKGH
401: FMKGDAVIVI KGDLKNLKGW IEKVDEENVL IRSEMKDLPN PIAVNGRELC KYFEPGNFVK VVSGIHEGGT GMIVKVDQHM LIILSDTTKE HICVFADHVA
501: KSAEVTKGVT KIGDYELHDL VILSDFSFGV ILKLDSEAIQ ILKGVPDSSE VSIVKASEIK YKIWKKINVQ DRYKNVVAVK DVVRVIEGPS KGKQGPVVQI
601: YKGVLFIHDR HNLEHTGFIC TRCSSCVLAG GNFKTPALVP PSPRRFQRAD MGYNPGAGGR HQGGRGRRGD DHLVGTYVKI RLGPFKGYSG RLVEVKDKLV
701: RVELEAKIVT VERKAISDMT DNVVATPQYN MGSQTPMHPS RTPLHPCMTP MRHSGATPIH DGMRTPMRGR AWNPYMPMSP PRDNWEDGNP GSWGTSPYEA
801: ATPGSDWGSS TPGRSSYRDA GTPINNANAP SPMTPSSTSY LPTTPGGQAM TPGTDLDVMS LDIGGDAETR FIPGILVNVH KAGEDRNPGV IRDVLPDGSC
901: VVALGHRGEG ETIRATQNKV SLVCPKKNER VKILGGKYCG STAKVIGEDG QDGIVKLDES LDIKILKLTI LAKLVHE
101: HRRQYYQRGF HPHEEDVDEL EKRTLERLST KYAKDDYELD DVNDVDQQAL LPSVRDPKLW LVKCAIGRER EVAVCLMQKI VDRGSEFKIR SAIALDHLQN
201: YVYIEADMEA HVKEAIKGMR NIYANQKILL VPIKEMTAVL SVESKAIDLS RDSWVRMKLG IYKGDLAQVV DVDNVRKRVT VKLIPRIDLQ ALANKLEGTE
301: NVKKKAFAPP PRFMNIDEAR ELHIRVEHRR DPMTGDYFEN IGGMLFKDGF LYKKVSTKSI AAQNVTPTFD ELERFKRPNE NGEIDFVDES TLFANRKKGH
401: FMKGDAVIVI KGDLKNLKGW IEKVDEENVL IRSEMKDLPN PIAVNGRELC KYFEPGNFVK VVSGIHEGGT GMIVKVDQHM LIILSDTTKE HICVFADHVA
501: KSAEVTKGVT KIGDYELHDL VILSDFSFGV ILKLDSEAIQ ILKGVPDSSE VSIVKASEIK YKIWKKINVQ DRYKNVVAVK DVVRVIEGPS KGKQGPVVQI
601: YKGVLFIHDR HNLEHTGFIC TRCSSCVLAG GNFKTPALVP PSPRRFQRAD MGYNPGAGGR HQGGRGRRGD DHLVGTYVKI RLGPFKGYSG RLVEVKDKLV
701: RVELEAKIVT VERKAISDMT DNVVATPQYN MGSQTPMHPS RTPLHPCMTP MRHSGATPIH DGMRTPMRGR AWNPYMPMSP PRDNWEDGNP GSWGTSPYEA
801: ATPGSDWGSS TPGRSSYRDA GTPINNANAP SPMTPSSTSY LPTTPGGQAM TPGTDLDVMS LDIGGDAETR FIPGILVNVH KAGEDRNPGV IRDVLPDGSC
901: VVALGHRGEG ETIRATQNKV SLVCPKKNER VKILGGKYCG STAKVIGEDG QDGIVKLDES LDIKILKLTI LAKLVHE
Arabidopsis Description
Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.