Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G325100.2 | Wheat | nucleus | 95.38 | 95.57 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 93.65 | 93.92 |
| OQU85804 | Sorghum | cytosol | 67.31 | 69.1 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 68.56 | 67.78 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 63.75 | 65.9 |
| Os02t0772000-00 | Rice | nucleus | 21.73 | 65.32 |
| KRH53382 | Soybean | nucleus | 60.96 | 61.02 |
| KRH64551 | Soybean | nucleus | 61.44 | 60.86 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 58.75 | 59.09 |
| Solyc04g064700.2.1 | Tomato | nucleus | 58.27 | 58.27 |
| Bra000641.1-P | Field mustard | cytosol | 57.02 | 56.96 |
| Bra037857.1-P | Field mustard | cytosol | 13.27 | 54.98 |
| Bra022968.1-P | Field mustard | nucleus | 50.0 | 50.98 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 10.77 | 45.71 |
| Bra037858.1-P | Field mustard | cytosol | 3.56 | 44.58 |
| AT4G08360.1 | Thale cress | cytosol | 5.67 | 41.84 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 20.38 | 15.2 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032784 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 |
| PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | SMART:SM00738 |
| SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS6D01G304800 |
| EnsemblPlants:TraesCS6D01G304800.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06082 | TIGR:cd06083 | TIGR:cd06084 |
| TIGR:cd06085 | TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:-:413973608..413980331
Molecular Weight (calculated)
114504.0 Da
IEP (calculated)
5.010
GRAVY (calculated)
-0.578
Length
1040 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSRRGREEEE EEFEEVEEEE EADESEVEEE EQVEERGGKR SRGGGGKGPG VASFIDDAAS EDDEEEDEDD DDEDDDYEEG GRGRGRRGRP SKRKRSILID
0101: DMAQVDDDDG EEEEEDGYEE GFIDDDARAD NPDEDVKKGS RRHFNPNPMD DADDMENLEE MLKWKYRTQS HSDFDEEGLT EVEQQALLPS VKDPKLWMVK
0201: CAVGHERETA LCLMQKFIDR QDLQIKSVVA LEHLKNYIYV EAEKEAHVKE ACKGLRNIFS SAKILLVPTK EMTDVLSVTS KSADLSRDTW VRLKLGIYKG
0301: DLAKVVEVDD VRQKVTVKLI PRLDLQALTD KLKGLKVAKK KSFIPPPRLF STDEAREMNI PVERRRERDS GEYFEMVGAL KFEDGFLRKK VSIKSISTHN
0401: VKPSLDELEK FGRVGDDVNE DVARLSTLSR KKGHFMKGDA VVVVKGDLKD IRGCVEKVED SIVHIRPTRS DLPKTLAFSE KDLCKYFNPG DHVKVVFGVQ
0501: EGVTGMVVKV EGHVLTILSD TSKEHIRVFA DHVVESSEVT TGLTRIGDYE LHDLVLLDNL SFGVIVRVES EAFQVLKGVP DKPEVLLVKL REIKYKIDRR
0601: TSAKDSKNNT VSTKDIVRVI EGPCKGKQGP VEHIHKGICF IHDRHHLEHS GFICAKAQSC VLVGGSVVNS SRMGVDTADP RLGAFRSPAR ILQSPGGLPP
0701: RGPYMNSGGR FGGGGRGGRG HDALVSRCIK IKSGPYKGYR GRVKEVNGAL VRVELDSLMK IVTVKREDIA DTANVGTPFR ESRYSLGSET PMHPSRTPLY
0801: PIQTPMREPG ATPICDGSQT PMHNQAWAPM SPPRDNQEDG NRGTWGAWGS SPAYQPGTPV ARPFDAPTPG SGWESTSGTG FADAPFNAPT PSAQPMTPIP
0901: ASYLPGTPGG QLMTPGNAGM DVMSPMIGDE GGSNWLLPDV CVNVSRGDGS TNGVVKEVLL DGSCRVALGP SGSGDEVTAL PDELEIIRPK KSDRVKIMNG
1001: SMRGVIGRLV GVDGSDGIVR VESPLDMKIV DLVILGKLVN
0101: DMAQVDDDDG EEEEEDGYEE GFIDDDARAD NPDEDVKKGS RRHFNPNPMD DADDMENLEE MLKWKYRTQS HSDFDEEGLT EVEQQALLPS VKDPKLWMVK
0201: CAVGHERETA LCLMQKFIDR QDLQIKSVVA LEHLKNYIYV EAEKEAHVKE ACKGLRNIFS SAKILLVPTK EMTDVLSVTS KSADLSRDTW VRLKLGIYKG
0301: DLAKVVEVDD VRQKVTVKLI PRLDLQALTD KLKGLKVAKK KSFIPPPRLF STDEAREMNI PVERRRERDS GEYFEMVGAL KFEDGFLRKK VSIKSISTHN
0401: VKPSLDELEK FGRVGDDVNE DVARLSTLSR KKGHFMKGDA VVVVKGDLKD IRGCVEKVED SIVHIRPTRS DLPKTLAFSE KDLCKYFNPG DHVKVVFGVQ
0501: EGVTGMVVKV EGHVLTILSD TSKEHIRVFA DHVVESSEVT TGLTRIGDYE LHDLVLLDNL SFGVIVRVES EAFQVLKGVP DKPEVLLVKL REIKYKIDRR
0601: TSAKDSKNNT VSTKDIVRVI EGPCKGKQGP VEHIHKGICF IHDRHHLEHS GFICAKAQSC VLVGGSVVNS SRMGVDTADP RLGAFRSPAR ILQSPGGLPP
0701: RGPYMNSGGR FGGGGRGGRG HDALVSRCIK IKSGPYKGYR GRVKEVNGAL VRVELDSLMK IVTVKREDIA DTANVGTPFR ESRYSLGSET PMHPSRTPLY
0801: PIQTPMREPG ATPICDGSQT PMHNQAWAPM SPPRDNQEDG NRGTWGAWGS SPAYQPGTPV ARPFDAPTPG SGWESTSGTG FADAPFNAPT PSAQPMTPIP
0901: ASYLPGTPGG QLMTPGNAGM DVMSPMIGDE GGSNWLLPDV CVNVSRGDGS TNGVVKEVLL DGSCRVALGP SGSGDEVTAL PDELEIIRPK KSDRVKIMNG
1001: SMRGVIGRLV GVDGSDGIVR VESPLDMKIV DLVILGKLVN
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.