Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr9P05150_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | GSMUA_Achr9P05150_001 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 10.44 | 53.23 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 12.82 | 51.27 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 41.93 | 42.67 |
| CDY41384 | Canola | nucleus | 37.03 | 30.99 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 10.44 | 26.29 |
| CDX70245 | Canola | nucleus | 37.66 | 21.1 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 48.42 | 19.78 |
| Zm00001d010719_P002 | Maize | nucleus | 49.05 | 19.47 |
| OQU78267 | Sorghum | nucleus | 48.89 | 19.42 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 48.26 | 19.41 |
| Zm00001d038644_P004 | Maize | nucleus | 48.42 | 19.02 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 47.94 | 19.0 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 29.91 | 18.79 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 41.14 | 18.64 |
| KRH35991 | Soybean | nucleus | 40.19 | 17.49 |
| Solyc11g008150.1.1 | Tomato | nucleus | 40.35 | 16.9 |
| KRG90770 | Soybean | nucleus | 39.08 | 16.52 |
| AT5G04290.1 | Thale cress | nucleus | 38.92 | 16.48 |
| Bra009470.1-P | Field mustard | nucleus | 37.18 | 15.23 |
| Os05t0506200-01 | Rice | nucleus | 12.5 | 13.48 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G16990_001 | EnsemblPlants:GSMUA_Achr7P16990_001 | EnsemblPlants:GSMUA_Achr7T16990_001 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | UniProt:M0TI86 | InterPro:NGN_dom_sf | PFAM:PF03439 |
| PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:TF_Spt5_NGN-domain |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000295F4E5 | SEG:seg | : | : | : |
Description
Putative transcription elongation factor SPT5 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16990_001]
Coordinates
chr7:+:18097448..18110085
Molecular Weight (calculated)
70277.5 Da
IEP (calculated)
8.491
GRAVY (calculated)
-0.334
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKGKQVVG KVAASAASSS SVKRKTAASE NPGGCRKRRR RPGVLQFFDD AAVDADSDCD NKEESEVDEK ITDLDFADDG KYENKKITGD GQSHHLPFFV
101: KEELSGDELE ELINDRYAHG SEHVTYNDDS AECDVKASEA DGMKDVIIWK VKCMVGRERQ MTFCFMQKYV ELENLGTKLQ ISSVFALEHV KGYVFVEADK
201: LYDVIEACKG FCSVYSSRIN IVPRSEVPHL LAIRNKLPEV CTGKLVRLKS GKYKGDLAQV VAVDDGQKQL TIKLVPRIDL QAIAKKFGGG ISLKLAAVPA
301: PRLISSHELE SFRPHIEVKR DRLTGELFEV LDGMMLKDGY LFKKVSTGSV IFSGVQPSSS ELLMFSDVTN NMVEDLNWVS SIYNARKKKP GAEILDDEVS
401: VVTKNDYGLH DLVLFGQKHY GVIIAVEKDC FKILKGDIEG ENVVTVKIQD IKNSCVDKMF TALDWKKTTI FINDIVKILA GPLQGREGVV KHMYKGTLFI
501: HAEYETKNSG FFSVKSVSCE KVKESKNSYG VKAGKGKEAN TSFSQSPIRT FDRENNAHGS TRRGQSDNEQ MFSIGQTLRI REGPLKGYLC RVVGIYRSDV
601: TVKLDSLVKL ITVKDKSLAV PKIKGYLMSL NT
101: KEELSGDELE ELINDRYAHG SEHVTYNDDS AECDVKASEA DGMKDVIIWK VKCMVGRERQ MTFCFMQKYV ELENLGTKLQ ISSVFALEHV KGYVFVEADK
201: LYDVIEACKG FCSVYSSRIN IVPRSEVPHL LAIRNKLPEV CTGKLVRLKS GKYKGDLAQV VAVDDGQKQL TIKLVPRIDL QAIAKKFGGG ISLKLAAVPA
301: PRLISSHELE SFRPHIEVKR DRLTGELFEV LDGMMLKDGY LFKKVSTGSV IFSGVQPSSS ELLMFSDVTN NMVEDLNWVS SIYNARKKKP GAEILDDEVS
401: VVTKNDYGLH DLVLFGQKHY GVIIAVEKDC FKILKGDIEG ENVVTVKIQD IKNSCVDKMF TALDWKKTTI FINDIVKILA GPLQGREGVV KHMYKGTLFI
501: HAEYETKNSG FFSVKSVSCE KVKESKNSYG VKAGKGKEAN TSFSQSPIRT FDRENNAHGS TRRGQSDNEQ MFSIGQTLRI REGPLKGYLC RVVGIYRSDV
601: TVKLDSLVKL ITVKDKSLAV PKIKGYLMSL NT
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.