Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | KRG89867 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | KRH14678 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | KRH73469 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 5.48 | 66.13 |
| KRH35991 | Soybean | nucleus | 58.73 | 60.47 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 23.88 | 57.49 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 5.82 | 55.06 |
| CDY41384 | Canola | nucleus | 20.87 | 41.32 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 16.52 | 39.08 |
| CDX70245 | Canola | nucleus | 25.89 | 34.31 |
| AT5G04290.1 | Thale cress | nucleus | 29.03 | 29.07 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.82 | 28.69 |
| Solyc11g008150.1.1 | Tomato | nucleus | 28.9 | 28.63 |
| Bra009470.1-P | Field mustard | nucleus | 28.29 | 27.41 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 22.68 | 24.3 |
| KRH53382 | Soybean | nucleus | 16.66 | 23.97 |
| KRH64551 | Soybean | nucleus | 16.72 | 23.81 |
| Zm00001d038644_P004 | Maize | nucleus | 25.62 | 23.8 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 24.41 | 23.59 |
| OQU78267 | Sorghum | nucleus | 24.88 | 23.38 |
| Zm00001d010719_P002 | Maize | nucleus | 24.75 | 23.24 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 24.48 | 22.95 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 23.88 | 22.72 |
| Os05t0506200-01 | Rice | nucleus | 8.63 | 22.01 |
| KRG90810 | Soybean | mitochondrion | 7.22 | 12.05 |
Protein Annotations
| EntrezGene:100818587 | MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EMBL:ACUP02012640 | EnsemblPlantsGene:GLYMA_20G112800 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006368 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032044 | UniProt:I1NFF5 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | EnsemblPlants:KRG90770 | ProteinID:KRG90770 | ProteinID:KRG90770.1 | InterPro:NGN_dom_sf | PFAM:PF03439 |
| ScanProsite:PS01108 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00739 |
| SUPFAM:SSF50104 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000233F1AB | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:-:35481494..35489250
Molecular Weight (calculated)
158352.0 Da
IEP (calculated)
6.764
GRAVY (calculated)
-1.066
Length
1495 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTNKGKGKGK EVAGKGSAGK RKGVFQDDKT GSGCKRNNRS VLQFFEDAAD VEESDFSDFS DDDDSDFDFS DDELNAAPRR MDMPDKGQSS LPRVVPKEEM
0101: LDEEEWDRIL EERYKDPSRF IRFSDEFGDD KGMDPSSIHE GVDELTPSIW KVKCTVGRER LSALCLMQKF ADLYSLGTKL KIKSAFSVDH MKGFVYIEAE
0201: KQYDINEACQ GIPGIYVTRV APVPNSEVYN LFSVRSRTPE ISEGMWARIK GGNYKGDLAQ VVSVNNTRKK VTVKLIPRID LQALAAKFGG GYSRQKMAVP
0301: APRLISSSEL EEFRPLIQIK RDRDTGKVFE VLDGLMLKDG YVYKKISPDS LSLWGVVPTE DELLKFGPSE NNESNDLEWL SQLYGDKKKK RVIRPEKGGG
0401: GKGESSSGSG VGNGFELYDL VCFGKKDFGV IVGMDKDDIY KILKEGSDGP DAVTVDRHEI KSGLFDLKLT ALDQHSKTIL VNDTVRVLEG PTKGKQGIVK
0501: HIYRGIVFLY DGNEEENGGY LTCKSNKCEK VKLAVGDCSG KDSEPGPLVF EDQPSSPRSP LSPKKPWQAR ENNREFNRGD NNNMFTIGQT LRIRIGPLKG
0601: YICRVIALRR ADVTVKLDSQ QKVLTVKCEH LSEVQGKSTA ISSSGDPDSS SSKPFDMLGT EGSSGGWLNG VGTSTGAGGW NAGGASSTGG SGWNAGGASS
0701: TGGGGWNAGG ASSTGGGGWN VGGASSTGGG GWNAGGASST GGGGWNAGGP SSKRDAGSNH SAPSLLNTES TSNPFSSKGA EDSAWETKSN SNKTSSWGAA
0801: VDKTGIASDA DQSGGWGSGG GSWGQAEHKT GSVGDGNQNS NWNTTKASEG ESSGWNSIQK SNETSSAGWG GGNGFKSGSD EGNLNSTWSG WKSGSSGVKQ
0901: AGNTAGTSDI DANQDAGWKN KPNKDGSESS GWETKNNWNA PVSSSNDKVE KGNDQGRWNA GKASGGLAAD FSQASGWKGG LSEHTQEGSN WGDKKFGSCD
1001: VSGDSSGNQG SNGWGQKSNW NSGSRSGNEN QNSHWSSGRN EPGNQDSNLD KKSNWNSGNS GNLASDPKSS NWNSGSGNSN ENSNWGTNVN NKSSWGTGNE
1101: NKNSSWSSGH SDPGNQDANQ GKKSNWNSGN SGNQPSDPNS NWNSNKSSWS AGNENKKSNW SSGDPGNTDS NWGNKNNCIS GSGDANQNTS WRSNSSWNTA
1201: NASSDDGNEG SNENSDGVGG GNWRGGYRGR GGSDRGGFRG RGFRGRGERG GFGGRGEHGG FGGRGERGGF GGRGRSDREG FGGRWGSEGG RGGRGRGRND
1301: QSGGWNNRRD SGEDGPSDWK KGADNGGWKN SNGSQAWNQD TGDKDRQSWS QGNADKEHPS WNQGSGRNQS WSSASGANDN GSQAWNQGNA DKEHPSWNQA
1401: GNKQSWSSAS GGGNNNWNNN GSSQTAEASW KKSTTEGTNI QGGGWNKGSS SNTTSKDWGQ SSAADKGQAS SWKEAADGAS GSWGKKNDGG DKGGW
0101: LDEEEWDRIL EERYKDPSRF IRFSDEFGDD KGMDPSSIHE GVDELTPSIW KVKCTVGRER LSALCLMQKF ADLYSLGTKL KIKSAFSVDH MKGFVYIEAE
0201: KQYDINEACQ GIPGIYVTRV APVPNSEVYN LFSVRSRTPE ISEGMWARIK GGNYKGDLAQ VVSVNNTRKK VTVKLIPRID LQALAAKFGG GYSRQKMAVP
0301: APRLISSSEL EEFRPLIQIK RDRDTGKVFE VLDGLMLKDG YVYKKISPDS LSLWGVVPTE DELLKFGPSE NNESNDLEWL SQLYGDKKKK RVIRPEKGGG
0401: GKGESSSGSG VGNGFELYDL VCFGKKDFGV IVGMDKDDIY KILKEGSDGP DAVTVDRHEI KSGLFDLKLT ALDQHSKTIL VNDTVRVLEG PTKGKQGIVK
0501: HIYRGIVFLY DGNEEENGGY LTCKSNKCEK VKLAVGDCSG KDSEPGPLVF EDQPSSPRSP LSPKKPWQAR ENNREFNRGD NNNMFTIGQT LRIRIGPLKG
0601: YICRVIALRR ADVTVKLDSQ QKVLTVKCEH LSEVQGKSTA ISSSGDPDSS SSKPFDMLGT EGSSGGWLNG VGTSTGAGGW NAGGASSTGG SGWNAGGASS
0701: TGGGGWNAGG ASSTGGGGWN VGGASSTGGG GWNAGGASST GGGGWNAGGP SSKRDAGSNH SAPSLLNTES TSNPFSSKGA EDSAWETKSN SNKTSSWGAA
0801: VDKTGIASDA DQSGGWGSGG GSWGQAEHKT GSVGDGNQNS NWNTTKASEG ESSGWNSIQK SNETSSAGWG GGNGFKSGSD EGNLNSTWSG WKSGSSGVKQ
0901: AGNTAGTSDI DANQDAGWKN KPNKDGSESS GWETKNNWNA PVSSSNDKVE KGNDQGRWNA GKASGGLAAD FSQASGWKGG LSEHTQEGSN WGDKKFGSCD
1001: VSGDSSGNQG SNGWGQKSNW NSGSRSGNEN QNSHWSSGRN EPGNQDSNLD KKSNWNSGNS GNLASDPKSS NWNSGSGNSN ENSNWGTNVN NKSSWGTGNE
1101: NKNSSWSSGH SDPGNQDANQ GKKSNWNSGN SGNQPSDPNS NWNSNKSSWS AGNENKKSNW SSGDPGNTDS NWGNKNNCIS GSGDANQNTS WRSNSSWNTA
1201: NASSDDGNEG SNENSDGVGG GNWRGGYRGR GGSDRGGFRG RGFRGRGERG GFGGRGEHGG FGGRGERGGF GGRGRSDREG FGGRWGSEGG RGGRGRGRND
1301: QSGGWNNRRD SGEDGPSDWK KGADNGGWKN SNGSQAWNQD TGDKDRQSWS QGNADKEHPS WNQGSGRNQS WSSASGANDN GSQAWNQGNA DKEHPSWNQA
1401: GNKQSWSSAS GGGNNNWNNN GSSQTAEASW KKSTTEGTNI QGGGWNKGSS SNTTSKDWGQ SSAADKGQAS SWKEAADGAS GSWGKKNDGG DKGGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.