Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G038830.1 | |
| HORVU7Hr1G107770.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | HORVU3Hr1G038830.1 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | HORVU7Hr1G107770.1 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G324800.1 | Wheat | nucleus | 74.92 | 77.25 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 65.89 | 75.34 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 72.04 | 73.14 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.45 | 57.26 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.0 | 47.94 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.7 | 47.47 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 16.8 | 43.16 |
| Zm00001d038644_P004 | Maize | nucleus | 41.19 | 40.83 |
| Zm00001d010719_P002 | Maize | nucleus | 40.25 | 40.33 |
| OQU78267 | Sorghum | nucleus | 40.13 | 40.23 |
| Os05t0506200-01 | Rice | nucleus | 13.04 | 35.49 |
| CDY41384 | Canola | nucleus | 15.61 | 32.98 |
| CDX70245 | Canola | nucleus | 20.38 | 28.81 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.51 | 28.69 |
| KRH35991 | Soybean | nucleus | 22.7 | 24.93 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 16.36 | 24.76 |
| KRG90770 | Soybean | nucleus | 22.95 | 24.48 |
| Bra009470.1-P | Field mustard | nucleus | 23.26 | 24.04 |
| AT5G04290.1 | Thale cress | nucleus | 21.57 | 23.04 |
| Solyc11g008150.1.1 | Tomato | nucleus | 21.76 | 23.0 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:A0A287G9T3 | ncoils:Coil | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G075270 |
| EnsemblPlants:HORVU1Hr1G075270.8 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom_sf | PFAM:PF03439 |
| PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 | InterPro:TF_Spt5_NGN-domain | UniParc:UPI000B468D8F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:510593261..510606693
Molecular Weight (calculated)
169640.0 Da
IEP (calculated)
5.009
GRAVY (calculated)
-1.000
Length
1595 amino acids
Sequence
(BLAST)
(BLAST)
0001: SSPPHSPLSP PTLAARSPPP PTMAVKGKGK QIASDDPGSS SGSKRRGAGP SSSSAKRRRG GSGVLQFVDD AAGVDDGYEE EEEEEEEEEE EAEELQDDLD
0101: DGFFTAGRTK GARIERSHAL PFLEHVKEEE LSGDELEQFI NDRYSNRVRY AGYGGSAERY DDDDSTMDGV KDPIIWRVKC MVGRERQMAF CFMQKFLDLQ
0201: KFGTKVPIIS AFSLDHVRGF VFVEAEKACD VTEACKGFCN VYVNRTSPVP VAEVPSLLST RAKPFEVSPG TWVRMKSGNY KGDLAQVVGA DDGRKRVLIK
0301: LIPRVDLHAI SKKFGGAVSL KGAAVPAPRL ISSQELEFFG PHIESRRDRQ TGDVFEVLDG LMFKDGFLYK RVALSSLIYW GIQPTDTEIL KFSSSPSTKS
0401: SADDMDWVSG IYGHNKKRNV PREPDMKKPA SSKDKSSKAS NLKGSTSTEN YDDDDDDAAF NLHDLVTFGR KDFGVIIAVE KDGFKILKGG PEGSIVTVRK
0501: QDIKKGVVDK MFTAVDHQNK SISMNDTVKV LEGPAQDKQG VVKHLYMGIL FICDESESEN NGFFCAQCGS CESIKKRRDL TNSEDNPIPM FSESAFISSE
0601: QNEQQNNERP YRAPREQLFQ VGEMLRIRKG PLKGYLCRVV RIFRNDVTVK LDSLLKIVTV QAEFLSVPTK RGDNSSSAPS GNFGTQDTQF TEAAKTSWDN
0701: GFASLDSDSW KPFSSSVLPA QNADGETEAD PWCKKPTSSA DGDSDPWGNK TTSAAVDIWN NSTTQNESSS DNAWGKQAGG GGLDAGGSSW GGGAVNKDSE
0801: KSGNWGEACK QVDTATGGDT DPWGSKVKEV ITKEADSWEK SSWSPEKKLE GDGQGWGQPF GKSNEDQEKN TVPNDADKGG SWDSTAAICV GSDNDAWAKS
0901: ATLPVAQDDA WGKSKDSGQN SASGGWDTVA VGQGQDEAWG KPKDSGAKSE ETNNGTGNWN KAGSSDQVDG SDWGKPKFSG GADSSSWNKG EAAEGDNQNS
1001: TWSRPAGNFE GGRGFGRGRG RGRGRESWDS GDRNDQGSCK GSWGNDSSAK PSWGSDTQVG NEGGDSGGYR GRGRGRGQYG GRGGGRDNGW RNGDRGTSEF
1101: GKERSSSDTP NWGNSQPWSS NEGTKPCDEN QAPSWNSSKD KKLSGGEQDD PWASKMIDKG QEQPTDAWSS KTTSTAGAEN NDGWNTKAKE STCNTGAKWE
1201: NAASGSSEAK LVLFCLIVDV RTTSLSFGSC LGEGQQGDPW SSKISSTAKG KEQKTDPWAS KVSSTAAEEK TDPWNTKGGN GNDGGWNNAG SSWGKASSSS
1301: GDQEPAWNKP KYGDDSAGFG RGGFGRGNHG RGRGRFGDSG SSWNGGSNTD DGSGGGRSED HWNRRDSDGG RGRGRGRFGR GDCNQGNNFG SGDGDGGSWS
1401: SGRGNRGRGG GYRNYGNDNN EGRASSQDRG GGWSHSSAWS ADKKGSAEED QSSSKGKSSW GNDNNDGWGA PKPSGGDDQA GKRDGNNSWS QNKPSSGNGS
1501: SILGQWGAPP GNTTAGTLGS AGGGGSWGKS NEDTWNSSKG TGGSEGGSKK EGSWDKAEGS GGQGGGGGSS WDKVASGGWD SSKGGDAGSD GGSGW
0101: DGFFTAGRTK GARIERSHAL PFLEHVKEEE LSGDELEQFI NDRYSNRVRY AGYGGSAERY DDDDSTMDGV KDPIIWRVKC MVGRERQMAF CFMQKFLDLQ
0201: KFGTKVPIIS AFSLDHVRGF VFVEAEKACD VTEACKGFCN VYVNRTSPVP VAEVPSLLST RAKPFEVSPG TWVRMKSGNY KGDLAQVVGA DDGRKRVLIK
0301: LIPRVDLHAI SKKFGGAVSL KGAAVPAPRL ISSQELEFFG PHIESRRDRQ TGDVFEVLDG LMFKDGFLYK RVALSSLIYW GIQPTDTEIL KFSSSPSTKS
0401: SADDMDWVSG IYGHNKKRNV PREPDMKKPA SSKDKSSKAS NLKGSTSTEN YDDDDDDAAF NLHDLVTFGR KDFGVIIAVE KDGFKILKGG PEGSIVTVRK
0501: QDIKKGVVDK MFTAVDHQNK SISMNDTVKV LEGPAQDKQG VVKHLYMGIL FICDESESEN NGFFCAQCGS CESIKKRRDL TNSEDNPIPM FSESAFISSE
0601: QNEQQNNERP YRAPREQLFQ VGEMLRIRKG PLKGYLCRVV RIFRNDVTVK LDSLLKIVTV QAEFLSVPTK RGDNSSSAPS GNFGTQDTQF TEAAKTSWDN
0701: GFASLDSDSW KPFSSSVLPA QNADGETEAD PWCKKPTSSA DGDSDPWGNK TTSAAVDIWN NSTTQNESSS DNAWGKQAGG GGLDAGGSSW GGGAVNKDSE
0801: KSGNWGEACK QVDTATGGDT DPWGSKVKEV ITKEADSWEK SSWSPEKKLE GDGQGWGQPF GKSNEDQEKN TVPNDADKGG SWDSTAAICV GSDNDAWAKS
0901: ATLPVAQDDA WGKSKDSGQN SASGGWDTVA VGQGQDEAWG KPKDSGAKSE ETNNGTGNWN KAGSSDQVDG SDWGKPKFSG GADSSSWNKG EAAEGDNQNS
1001: TWSRPAGNFE GGRGFGRGRG RGRGRESWDS GDRNDQGSCK GSWGNDSSAK PSWGSDTQVG NEGGDSGGYR GRGRGRGQYG GRGGGRDNGW RNGDRGTSEF
1101: GKERSSSDTP NWGNSQPWSS NEGTKPCDEN QAPSWNSSKD KKLSGGEQDD PWASKMIDKG QEQPTDAWSS KTTSTAGAEN NDGWNTKAKE STCNTGAKWE
1201: NAASGSSEAK LVLFCLIVDV RTTSLSFGSC LGEGQQGDPW SSKISSTAKG KEQKTDPWAS KVSSTAAEEK TDPWNTKGGN GNDGGWNNAG SSWGKASSSS
1301: GDQEPAWNKP KYGDDSAGFG RGGFGRGNHG RGRGRFGDSG SSWNGGSNTD DGSGGGRSED HWNRRDSDGG RGRGRGRFGR GDCNQGNNFG SGDGDGGSWS
1401: SGRGNRGRGG GYRNYGNDNN EGRASSQDRG GGWSHSSAWS ADKKGSAEED QSSSKGKSSW GNDNNDGWGA PKPSGGDDQA GKRDGNNSWS QNKPSSGNGS
1501: SILGQWGAPP GNTTAGTLGS AGGGGSWGKS NEDTWNSSKG TGGSEGGSKK EGSWDKAEGS GGQGGGGGSS WDKVASGGWD SSKGGDAGSD GGSGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.