Factsheet for VIT_19s0093g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04290.1	VIT_06s0009g01200.t01	AT2G27040.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02120.t01	Wine grape	cytosol	28.69	58.06
VIT_00s0131g00430.t01	Wine grape	cytosol	33.47	53.16
VIT_13s0019g04950.t01	Wine grape	nucleus	38.65	15.62
GSMUA_Achr7P16990_001	Banana	nucleus, plastid	26.29	10.44
CDY41384	Canola	nucleus	28.29	9.4
VIT_18s0001g15400.t01	Wine grape	cytosol	30.28	7.35
CDX70245	Canola	nucleus	28.69	6.38
Solyc11g008150.1.1	Tomato	nucleus	37.05	6.16
AT5G04290.1	Thale cress	nucleus	31.08	5.22
KRH35991	Soybean	nucleus	27.89	4.82
KRG90770	Soybean	nucleus	28.69	4.82
OQU78267	Sorghum	nucleus	29.48	4.65
Bra009470.1-P	Field mustard	nucleus	28.29	4.6
TraesCS1D01G325500.1	Wheat	nucleus	25.5	4.59
Zm00001d010719_P002	Maize	nucleus	29.08	4.59
HORVU1Hr1G075270.8	Barley	nucleus, plastid	28.69	4.51
TraesCS1B01G337800.2	Wheat	nucleus	27.09	4.33
TraesCS1A01G324800.1	Wheat	nucleus	26.29	4.27
Zm00001d038644_P004	Maize	nucleus	26.69	4.16
Os05t0506200-01	Rice	nucleus	5.18	2.22

Protein Annotations

Gene3D:3.30.70.940	MapMan:35.1	ProteinID:CBI32898	ProteinID:CBI32898.3	UniProt:D7TQX5	EMBL:FN596009
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006355	GO:GO:0006357	GO:GO:0006368	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032044	InterPro:IPR036735	InterPro:NGN_dom_sf	PFAM:PF03439
PANTHER:PTHR11125	PANTHER:PTHR11125:SF8	InterPro:TF_Spt5_NGN-domain	UniParc:UPI0001BE3A89	ArrayExpress:VIT_19s0093g00140	EnsemblPlantsGene:VIT_19s0093g00140
EnsemblPlants:VIT_19s0093g00140.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:16557000..16569957

Molecular Weight (calculated)

27788.0 Da

IEP (calculated)

8.328

GRAVY (calculated)

0.091

Length

251 amino acids

Sequence
(BLAST)

001: MSLCHKFASE VKFGYGASNA LVASTRGHCF DHSTSLLSNS LIPSIKDPTI WKVKCMVGRE RLSAFCLMNN YVDLQSLGTK LQIISVFLVD HVKGCIYIEA
101: DKQCDINEAC KGLCTIYTSR VAPVPKNEVT KFIKYDKKIY TSLSINILIK LEFPCPQCGA EYAGFLCNPN TVHLQCHACG GMMPSRNDIG VPQHCLGCDR
201: AFCGAYWHTQ RFGGSDSHFV VLLVCSHHRL NDQACLCHLL LAGMKRVGKS L

Best Arabidopsis Sequence Match ( AT5G04290.2 )
(BLAST)

0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW

Arabidopsis Description

RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.