CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	48.15	60.59
PGSC0003DMT400039204	Potato	cytosol	29.29	58.0
CDX92417	Canola	nucleus	89.9	41.46
TraesCS7D01G458800.1	Wheat	nucleus	59.93	38.2
CDY16587	Canola	nucleus	92.59	31.18
CDX92406	Canola	nucleus	85.86	28.21
CDY59516	Canola	nucleus	83.84	27.48
CDX92405	Canola	nucleus	84.51	27.43
CDY09103	Canola	nucleus	81.14	26.6
AT5G21030.2	Thale cress	cytosol	72.73	25.29
CDY16595	Canola	nucleus	75.76	24.46
GSMUA_Achr9P05150_001	Banana	nucleus	71.04	23.06
CDY56413	Canola	nucleus	70.71	22.75
CDY04475	Canola	nucleus	70.71	22.75
CDY48192	Canola	nucleus	70.37	22.67
CDX77061	Canola	nucleus	70.37	22.67
Zm00001d008249_P012	Maize	nucleus	68.69	22.67
Zm00001d040429_P012	Maize	nucleus	68.69	22.64
Os01t0275600-01	Rice	nucleus	68.35	22.46
TraesCS7A01G521000.1	Wheat	nucleus	60.61	22.19
OQU86696	Sorghum	nucleus	67.0	22.11
TraesCS3A01G188400.1	Wheat	nucleus	68.01	22.05
Os04t0151800-02	Rice	nucleus	67.34	21.95
TraesCS7B01G437900.1	Wheat	cytosol	59.6	21.93
HORVU3Hr1G038830.1	Barley	nucleus	68.01	21.91
EES18816	Sorghum	nucleus	66.33	21.67
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	68.01	21.4
TraesCS7A01G533100.1	Wheat	cytosol	64.31	21.2
Zm00001d039214_P025	Maize	nucleus	65.66	21.1
TraesCS1A01G445500.1	Wheat	golgi, unclear	65.66	21.08
TraesCS1D01G453600.1	Wheat	nucleus	65.32	21.04
TraesCS1B01G480100.1	Wheat	nucleus	65.66	21.04
TraesCS7B01G450300.1	Wheat	nucleus	64.65	20.89
TraesCS7B01G437700.1	Wheat	nucleus	60.94	20.59
CDX79495	Canola	nucleus	58.92	20.18
TraesCS3D01G191600.5	Wheat	nucleus	68.01	20.16
CDX84712	Canola	nucleus	58.59	20.07
TraesCS7D01G520400.1	Wheat	nucleus	61.28	20.02
EES00570	Sorghum	nucleus	59.26	19.6
TraesCS7B01G450200.2	Wheat	nucleus	58.92	18.9
CDY62055	Canola	nucleus	35.02	18.06
Solyc03g111760.2.1	Tomato	mitochondrion	50.84	16.48
CDY04311	Canola	cytosol, nucleus, plastid	44.44	13.47
CDX71410	Canola	nucleus	42.09	13.13
CDY04517	Canola	plastid	42.09	13.06
CDY22332	Canola	plastid	41.75	12.72
CDX94724	Canola	plastid	41.75	12.64
CDY68174	Canola	nucleus	43.77	12.36
CDY41831	Canola	nucleus	43.1	12.26
TraesCS7B01G373400.1	Wheat	nucleus	31.99	12.09
CDY23683	Canola	cytosol, nucleus, plastid	44.11	12.06
CDY51501	Canola	nucleus	35.35	11.68
Os01t0275200-00	Rice	golgi, peroxisome, plastid	17.85	11.35
CDY07349	Canola	nucleus	36.36	10.98
CDY28550	Canola	cytosol, plastid	35.69	10.86
CDY70429	Canola	plastid	31.31	10.48
CDY25885	Canola	cytosol	32.66	9.6
CDY55876	Canola	cytosol	31.99	9.18
CDY02373	Canola	nucleus	30.98	8.99
HORVU7Hr1G107770.1	Barley	nucleus	5.05	2.51
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	GO:A0A078K2C9	UniProt:A0A078K2C9	EnsemblPlants:CDY72062	ProteinID:CDY72062
ProteinID:CDY72062.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00023415001
InterPro:IPR003165	InterPro:IPR036397	PFAM:PF02171	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF20
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SUPFAM:SSF53098	UniParc:UPI0004EE4376
SEG:seg	:	:	:	:	:

Description

BnaCnng75800DBnaCnng75800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K2C9]

Coordinates

chrLK048763:-:128..1902

Molecular Weight (calculated)

33305.6 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.218

Length

297 amino acids

Sequence
(BLAST)

001: MERSPRAMMP LVTQVYTFIV GMDVSHGSPG QSDIPSVAAV VGSREWPLIS KYRACVRTQS RNTEMIDNLF KPVTDENGKL VDEGIFWELL FDFYTSSGNR
101: RPEHIIIFRD GVSESQFNQV LNIELDQMMK ACKFVEENWE PKFTVIIAQK NHHTKFFQAE SPGNVPPDNV PPGTIVDSKI CHPRNNDFYL CAHNGMIGTT
201: RPTYYHVLYN EIGFSTDDLQ ELVHSLSYVY QRSTTAISVV APIMYAHLAA AQMATAMKFE DNSETSSSHG GITTSEAVPV SPMPKLKVDV ASSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.